Sesamum indicum (sesame): 105173416
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Entry
105173416 CDS
T04135
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105173416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sind03400
]
105173416
DNA repair and recombination proteins [BR:
sind03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
105173416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
Motif
Other DBs
NCBI-GeneID:
105173416
NCBI-ProteinID:
XP_011093441
UniProt:
A0A6I9U6X3
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Position
LG11:6325066..6332918
Genome browser
AA seq
1276 aa
AA seq
DB search
MKRRSVHQINHPFDPHPFEAFWGGSWQPVERLKIGDGAISTLIVENGVVTEEDIPMSHLR
IRSRKAMSFDCTSFLRPGVDVCVLTTSQNSENTHDERNAAPVWIDAKLRSIERKPHDVAC
DCNFYVSFYLEQGPDLILANKKLSKEMSMIKIDQISVLQRLELKPCDSEHYRWSCSEDCS
SVQKFKLFTGKFCADLTWLIVTSVLRKAAFDIRSIRNHIVYEVSEYNPHVAQADPCNHTY
TVNFKVENEVSTPFIVQFALDALQEGPEGREVGFLSSFDPMELRRSKRRNVQPERYLGCD
NLPDYEIEVTRLGESKTYKLEYDEISSESDGYDEMPLALSVQADNQYQQYGGAEDWIRSY
RKNNSGCNLESGVLKRKSHKKSSSSKHKKKSGAMDKGPQGNELAIVPANTSAENISDFFD
KKFRNVKIPDDYSEDIGDMVSKYFYMNASPSSSKKKTFDFDFMEVESGSRRRQKGTRRKY
HRTSSLSASLKRDCVYIRESIYDVRSFRKGSVTAQLCRELIRRCMNNIDATLKNEPIQPP
VVDQWKEFQSTTSSNRREQDEKSTVNNEDEISEIDMLWKEMELALASWYLFDDNEDSHVQ
PTAEVPKPREIVENKCEHDFRLNEQVGTICRLCGFVETEIKDMLPPFTASAHSIPNKEQR
TEDEPELKKSEDGELEPDLKDKLRSHQKRAFEFLWRNIAGSLIPSRMEKKKKRRGGCVIS
HSPGAGKTLLIIAFLVSYLKLFPGSRPLVLAPKTTLYTWYKEIIKWKVPIPVYQIHGGQT
YKGEVLKQRMKLAPGLPRNQDVMHVLDCLEKMQRWLSHPSILLMGYTSFLTLTREDSHYA
HRKYMAQLLKQCPGILILDEGHNPRSTKSRLRKALMKVNTRLRVLLSGTLFQNNFGEYFN
TLCLARPVFVNEVLKELDPKYEKRNKERQTQFSLENRGRKLLIDKISKKIDSNKGEERAQ
ALKTLKKLTSKFIDVYEGGTSDKLPGLQCYTLMMKSTSLQQEILLKLQNQRPVYKGFPLE
LELLITLGAIHPWLIRTTACSSQYFTPEELEDLEQFKFDMKSGSKVRFVMNLIPRCLIRN
EKVLIFCHNIAPINLFLQIFERFYGWRKGREVLVLQGDIELFERGRVMDKFEEPGGPSKV
MLASITACAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPGQNKVVYVYQLLATGTLE
EEKHSRTTWKEWVSDMIFSDEHVEDPSHWQAPKIEDELLREIVEEDRAALFHRIMKNEKA
SNVIRGKGMLKKMRDK
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcggtctgtacatcaaattaaccacccatttgatccacatccgtttgaggct
ttctggggtggctcatggcaacccgtggagcgcttaaaaattggtgatggagctatctcg
acgcttatagttgagaacggagtggtcactgaggaggacattcccatgtcacatcttcgt
ataaggtctaggaaagcaatgtcgtttgactgcacatcctttctaaggccaggagttgat
gtgtgtgtgctcacgacatctcagaactctgaaaatacacatgatgagagaaatgctgcg
cccgtctggattgatgcgaaactgcgatctattgagagaaaacctcacgacgttgcatgt
gactgcaacttctatgtcagtttctatcttgagcaaggccctgatcttattttggcaaac
aaaaaacttagtaaggagatgagcatgataaaaatcgaccaaatttctgttcttcaaagg
cttgaactgaaaccatgtgactccgaacattaccgttggagctgctctgaggactgttct
tcagtgcaaaagtttaaattgtttacgggaaaattctgtgctgacctcacatggctcatc
gttacatcagttctgaggaaagctgcatttgatataaggtcgatacggaaccatatcgtt
tacgaggtttcagaatataaccctcacgtagctcaagcagatccctgcaatcatacttat
actgtgaatttcaaggtggaaaatgaagtttctacccccttcattgtacagtttgctcta
gatgcccttcaggaaggacctgagggacgtgaagtcggattcttgtcatcatttgatccc
atggagttgcgtagatcaaaacgccggaatgtacaacccgaacgttatttaggttgtgat
aatcttccagattatgagattgaggttactcgattaggagaaagcaagacatataaattg
gagtacgatgaaatttcttctgaaagtgatgggtatgatgagatgccattggcactatca
gttcaggctgataaccaatatcagcaatatggtggtgctgaagactggattaggtcttac
agaaaaaataattctggatgcaatttggaatcaggtgtgctgaaacgtaaaagccacaag
aaatcaagttcatctaaacataaaaaaaaatcaggtgctatggataaaggacctcaggga
aatgaacttgctattgttcctgcaaatacatctgctgagaatatctcagatttcttcgat
aaaaagtttcggaatgttaaaattcctgatgattattcagaagatatcggagacatggtt
tccaaatatttctacatgaacgcttccccatcctcgagtaaaaagaaaacatttgatttt
gacttcatggaggtggaaagtggaagtagacggcgccagaaaggcaccagacggaaatac
cacaggacaagtagcctttctgctagtttaaagcgggactgcgtttatataagagagagc
atttatgatgtgagaagctttaggaagggctctgtaactgcacagttatgtcgggaattg
attagaagatgcatgaacaacatagatgccactcttaaaaatgaacctatacaaccgcct
gtggttgatcagtggaaagagttccagtcgacgacatcctcaaatagaagggaacaggat
gagaaatccacggtgaacaatgaagacgaaatatctgaaattgatatgttatggaaggaa
atggagctagctcttgcatcatggtatctctttgatgataacgaggattctcatgttcag
cctactgctgaagtgccaaagccacgtgaaattgtggagaataagtgtgaacatgatttc
cggctcaatgaacaagttggaactatttgccgattatgtggatttgtggagactgaaata
aaggatatgctcccaccatttactgcatctgcccactctattccgaataaggagcaaagg
acagaagatgagccagagctcaagaaaagtgaagatggagaactagaacctgatctcaaa
gacaaattacggagccatcaaaagagagcttttgagtttttgtggcgaaacattgctggt
tctttgataccttcccgaatggagaaaaagaaaaagaggagaggtggttgcgtcatttcc
cactcccccggagctgggaagactttgctcatcattgcatttcttgtgagctacctgaaa
ttgtttccaggatcgaggccactagttcttgctccaaaaacaacactttatacttggtac
aaagagataataaagtggaaagttcctattccagtttatcagatccacggtggtcaaaca
tataaaggtgaagttttaaagcagagaatgaagttagctccaggtcttccacgcaatcaa
gatgttatgcacgttctcgactgcctggaaaagatgcagaggtggctgtcccatcctagc
atcctgctcatggggtacacgtctttcctaactttaacacgggaagattcacattacgct
cacaggaaatatatggcgcaattgctaaagcagtgtccaggaattttgatactcgatgaa
gggcacaaccctcggagtacaaaatcaagactgagaaaggctttgatgaaggttaacaca
aggcttagagttttgctttctggaacattgtttcagaacaattttggtgagtatttcaac
accctttgcctagcaaggccggtattcgtcaatgaggtcttgaaggagttggatcccaag
tatgagaagagaaacaaagagagacaaacacagttctcactggaaaatcggggaagaaag
cttttgattgataagatctcaaaaaagattgactcaaataagggagaagaaagagcacaa
gctctgaaaacactgaagaagttaacgagtaagttcatagacgtgtacgaggggggaacg
tccgacaaacttcccggtttgcagtgttatacattaatgatgaagtcaaccagtcttcag
caagaaattcttttaaaacttcagaatcaaaggcctgtctacaagggatttccactggag
ttggagttattaatcacgcttggggcaatccatccttggttgattagaacaacggcgtgc
tccagtcaatactttactccagaagaactagaagacctcgagcaattcaagtttgatatg
aagtcaggttcaaaagtcagattcgtgatgaacctcataccacgatgtctgatcagaaat
gaaaaggtgttgatattttgccacaatattgctccaatcaatctgttcctacagatattt
gagaggttttatggatggcgtaagggtcgagaagtccttgtgcttcaaggagatatcgaa
ctctttgaaagaggacgagtgatggacaaatttgaagagccaggcggaccatcgaaagtc
atgttggcctcaattacagcttgtgctgaaggcatcagcttgactgctgcatcacgtgtg
attttgcttgactcggagtggaatccttccaagagcaagcaagccatagcacgtgcattt
cggcccggtcagaacaaagttgtttatgtgtatcaactcttggccaccggcactctggaa
gaagaaaaacacagcagaactacttggaaggagtgggtttcggatatgatattcagcgat
gaacacgttgaggacccttctcattggcaagcaccaaaaatcgaagatgaactgctgagg
gagattgtcgaagaagatcgagctgcgcttttccatcggattatgaagaatgagaaagct
tcgaatgtgattaggggaaaaggcatgctgaagaaaatgagagataagtga
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