KEGG   Sesamum indicum (sesame): 105173476
Entry
105173476         CDS       T04135                                 
Name
(RefSeq) sm-like protein LSM7 isoform X1
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
sind  Sesamum indicum (sesame)
Pathway
sind03018  RNA degradation
sind03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sind00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105173476
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105173476
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sind03019]
    105173476
   03041 Spliceosome [BR:sind03041]
    105173476
Messenger RNA biogenesis [BR:sind03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105173476
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105173476
Spliceosome [BR:sind03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105173476
SSDB
Motif
Pfam: LSM DUF150_C Hfq KNOX2
Other DBs
NCBI-GeneID: 105173476
NCBI-ProteinID: XP_011093527
UniProt: A0A6I9U815
LinkDB
Position
LG11:complement(7047792..7051036)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPEDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcgggcagaaaggaaacagttttggatttagcgaaattcgtggacaagggtgtccaa
gtcaaactaactggtggaagacaagtgactggaactctgaaagggtatgaccaattgctg
aatcttgttctggatgaagcgatagaatttcttagagatccagaagatccgctgaagact
actgaccagacccgtcgccttggcctcatagtttgccgcggaactgctgtgatgcttgtt
tccccaacagatggcacagatgaaatcgccaatccattcgtccagcctgatggggcttag

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