Sesamum indicum (sesame): 105173476
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Entry
105173476 CDS
T04135
Name
(RefSeq) sm-like protein LSM7 isoform X1
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105173476
09123 Folding, sorting and degradation
03018 RNA degradation
105173476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105173476
03041 Spliceosome [BR:
sind03041
]
105173476
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105173476
mRNA degradation factors
5'-3' decay
Lsm complex
105173476
Spliceosome [BR:
sind03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105173476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
KNOX2
Motif
Other DBs
NCBI-GeneID:
105173476
NCBI-ProteinID:
XP_011093527
UniProt:
A0A6I9U815
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Position
LG11:complement(7047792..7051036)
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPEDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcagaaaggaaacagttttggatttagcgaaattcgtggacaagggtgtccaa
gtcaaactaactggtggaagacaagtgactggaactctgaaagggtatgaccaattgctg
aatcttgttctggatgaagcgatagaatttcttagagatccagaagatccgctgaagact
actgaccagacccgtcgccttggcctcatagtttgccgcggaactgctgtgatgcttgtt
tccccaacagatggcacagatgaaatcgccaatccattcgtccagcctgatggggcttag
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