Sesamum indicum (sesame): 105174118
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Entry
105174118 CDS
T04135
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105174118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105174118
03019 Messenger RNA biogenesis [BR:
sind03019
]
105174118
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105174118
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105174118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
105174118
NCBI-ProteinID:
XP_011094416
UniProt:
A0A6I9U9R4
LinkDB
All DBs
Position
LG11:complement(11968814..11977055)
Genome browser
AA seq
1091 aa
AA seq
DB search
MESTRRPFNRSLSKEPGLKKPRLTEDHAAADRSSNVRTGFVQRPALPNSGLARVQRDRDS
ESSGAVRGLYQQQPGHQLHQELVNQYKTALSELTFNSKPIITNLTIIAGENSHAAKAIAA
TVCANILEVPREQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPPIHQGMR
HLFGTWKGVFPPQTLQMIEKELGFTTTANGSSSGTTTSRPDSQAQRSAHSIHVNPKYLEA
RQRLQPTRAKGSGSDISGTLVSSPDDVEPPARITTISSKRSWADPYTKSIQHHQKDKVNE
PVRDKSSTIRFPDSKYGSSISGHESLGTERVSEKFKEPGLDRPWYESATDVTGKVSNQSN
GFHMEHEFESYPAHQSANSDSHLLLKQNFASRKLNGVSRSWKNSEEEEYVWDEMNTRPTD
LSAANTSAKDNWTPDDTEKLDFGGHIRRPQSIHDIGPRVDDEISTDSLSTEIGHVASGAQ
VPLSWSEELHIPEGNVLLGPGKNISGYSEGYSTQMKSSANTVGRTPYQPQVGPDPTGGLD
FNFSTNVMPGPKVSMMQQEHTLGTASLMKSTRHQRPPSPSVSAHNPNRLHSSLAERNQGS
TGPPTDPRRPPGQRNTGSLDQSHHRDVYQSSTQRFQPHSIQTSPAAMPPLQQRKYVPSTQ
QRKLEVSEFGSSGNGQNLLSIQISGSESHSTIGNSSSDLSNPLTVDSPGQSINSSLLTGV
TKTGMIGSTSLMDSSTKLDSEEVELVSSPGMQPSLQSDSHPASFLSSPPLHENIPLPGFS
KEKSEQPPVPSAPHPSSLGSEQIPSTANPTSNPVSSLLSSLVAKGLISASKSDSLSSAST
QKPDQSLNYGPGVSSTSSTPDSSVPLTMRKPLLSITDQPSSSRPVAEISDGLRRPKTNIK
DTIGFEFRPDVVRNLHPDVITDLVSDLPYQCRICGLRLKLQEPLDRHMEWHALRAPDQNP
LNKNSRRWYTSSVDWVAGVGYILAADSPSDLSGESGAALTSSEQMVPADESQCACILCGE
LFEDCYSQETKEWMFKKAVYLNIQSSESQETIGTASDTASPRPIVHINCMSEDILQDLGL
ACDVELEKDAA
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagagtacacgcagaccatttaatagatctctttcgaaagaaccaggactgaagaaa
cctaggctcaccgaggaccatgcagctgccgatcgcagctccaatgtccgtaccggattc
gttcaacgacccgcgcttccaaactcgggccttgcgagggtccagcgggaccgagattcg
gagagcagtggtgctgtgcgtggcctctaccaacagcaaccaggccaccagctgcatcag
gagctcgttaatcagtacaagaccgcattgtctgagctgactttcaactcaaaacccata
ataacaaacttgacgatcattgcgggtgaaaattcgcacgcggccaaggccattgcagca
actgtctgcgccaatattcttgaggtcccaagagagcaaaaactgccatccctatattta
ctagacagtattgtgaagaacattgggagggattatatcaaatactttgcttccagatta
cctgaggttttctgtaaggcatacagacaagttgatcctccaatacatcaaggtatgcgc
cacctctttggcacctggaaaggagtcttccccccacaaacacttcagatgattgagaag
gagctgggatttactactactgccaatggttcatcttcaggaacaacaacatctaggcca
gactcacaggcccaacgttctgcacacagcattcacgtaaaccccaagtatctagaggca
aggcagcggctgcagcccactagagcaaaaggatctggcagtgacattagtggaactttg
gtgagctcacctgatgatgttgaaccaccagcgagaattaccaccattagttcgaagaga
tcatgggctgatccttatactaagtctattcagcatcatcagaaagataaagtaaatgaa
cctgttcgtgacaaaagttcaactatacgttttccggattctaaatatggttccagcata
tcagggcatgagagcttgggaactgaaagagtgagtgaaaaatttaaagaaccaggactt
gataggccctggtatgaatctgccactgatgtaactgggaaagtatccaatcaaagtaat
ggttttcacatggaacatgagtttgaaagctatcctgcccatcagtctgctaactctgac
tctcaccttctgctcaagcaaaacttcgccagtaggaaattgaatggagtcagtaggagc
tggaagaactctgaggaagaggagtatgtgtgggatgagatgaatactagacccactgat
ctcagtgcagctaatacttcagctaaagataattggacacctgatgacactgaaaaattg
gactttggtggtcatattcgaaggcctcaaagtatacacgacattgggccaagggttgat
gatgaaatatcaactgattctctatccactgaaataggccatgttgcatctggggctcaa
gtaccattgtcttggtcagaagagctgcatataccagaaggaaatgtacttttagggcct
ggtaaaaacatatcaggttatagtgaggggtactcaactcaaatgaaaagttcggcgaac
acagttggcaggaccccgtaccaaccacaggttggccctgatcctactggaggcctggat
tttaatttttcaacaaatgtgatgccagggcccaaagtttctatgatgcaacaggaacat
actcttggaactgcatcattgatgaaatccacaaggcatcaacgtcctccttcaccctct
gtgtcagcacacaatcctaatcggttacacagcagtcttgctgagcgcaatcaaggctcc
acgggacctcctacagatccaagaaggcccccaggacagagaaatacggggtcgctcgac
caatcgcaccatcgggatgtttaccagtctagcacacagaggtttcagccgcatagtata
cagacttcacctgctgcaatgcctcctcttcagcagaggaaatatgtcccctcaactcaa
cagagaaagcttgaagtatctgagtttggatcttctggtaatggacagaacttgttgtct
attcaaatttcaggctctgaaagtcactcaactattgggaactcatcatctgacctatca
aatcctcttactgttgactcccctggacaatcaatcaatagcagcttgttaactggtgta
acaaaaactggaatgattggtagtacttctctcatggatagctcaaccaaactggattct
gaggaggttgagcttgtgtcatctccaggcatgcaaccatctcttcaaagtgactctcat
cctgctagttttttgtcttctccacccttgcatgaaaacataccgcttccggggttttct
aaagaaaagtcagaacagccacccgttccatctgccccccatccatcatctttagggtca
gaacagataccaagtacagctaatcccacctctaatccagtttctagcctattaagttca
ttggtggcgaaaggcttgatatctgcttccaagtcagactcactttcatctgcctcaacc
cagaaaccagatcaatctcttaactatggtcctggggtttcaagcactagttcaactcca
gattcttctgtaccattgaccatgagaaaacctctgttatccatcacagatcaaccatca
tcatccagacctgttgctgagatctctgatggtttgcgacggccaaagacaaatataaaa
gatactattggttttgaattcaggccagatgtagtccgtaatttgcatccagatgtaatc
actgatcttgtttctgatctcccatatcagtgtaggatctgtggtcttcgactcaagctt
caagaaccacttgatagacacatggaatggcatgcattaagggctcctgaccagaatcct
ttgaacaagaactcaaggaggtggtataccagctcagttgattgggttgctggagttggt
tacattctggctgcagacagtccgtcagacctgtcaggagaatcaggtgcagcactgacc
agtagtgagcagatggttcctgcagatgaaagccagtgtgcctgcatcctgtgtggcgag
ttgtttgaagactgctacagtcaagaaacaaaagaatggatgttcaaaaaagctgtttac
ttgaatatccaatcatcagaatcacaggaaacgatcggaactgcaagtgatactgctagt
ccgaggccaatagtccatattaactgcatgtcagaagatattcttcaggacttgggacta
gcttgtgatgttgaactggaaaaggatgctgcgtaa
DBGET
integrated database retrieval system
