Sesamum indicum (sesame): 105174173
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Entry
105174173 CDS
T04135
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105174173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105174173
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105174173
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
PEARLI-4
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
105174173
NCBI-ProteinID:
XP_020550604
UniProt:
A0A8M8V2Q7
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Position
LG1:16623375..16632194
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AA seq
1172 aa
AA seq
DB search
MGLIQMNQNVESDSPKALSSSKPLKSNLPNSPKFQNPFPFPPQPEPTSTSLPNSHRHTPI
KTPSPPLWLAQASTLASLTSSAPSFGFGSGTTSSAFSAPSFGFGSGTTSSAASTPSFGFG
SGTSSSASTTPSFGFGSGTSSSAASAPSFGFGTGTTSSTSSSPFGASPLFGSSSASATTS
SATATTTPFGASPLFGSSSSAAPTSSLFGSSSGTTTTLNPLGSSSSGSPPASSFFGSGSG
LSPSIFGSTSGGAPTSSIFGSSAPGTGQTTSPFGSNSSTAAPSSPSPSPSPLGTSTLFGS
PAPGSSTSFLSSAPTPSLFGSSSAASSSSTSTHLFGSAPAPASNLFGAAISASTPATTAP
AFGSIPTPTTGIFGSSTSASASGTTSPLFMSSPAPGGVMFGSSTSSSTTATTGATASLFG
QSSGSTSGLFGSSSALFGSSSSAPLFGTSLSSTSTALSFPLSTNTSSSASPTSASTSTSS
AAGFSFPASSASSTPGFSFSTAPSSTSSGFSFLKSTSSSVASASAAVSSSSTPGFSFGTT
GIQSSASASSLSSAPTSKLSTFGTTPSSLFSTVTTTTTTSASAPAAASVSSAASAGFPGF
GTTTTPASTSGNTGSLSLSLKSPVTAASSASQTQSTAVLPSFVLHVGVVDEDEEGDSISK
DGDAALGVSACSVTTTAKTVIKEKTSLTDHVDSSTTASVSIVQACSPVEDSERLKYEATP
DAKKNPTKEVVVDVSEYSSTESEALDGNELGHPACGRLMSVEFPLCTECVQLNLCLQNTL
CHRKAHLIKQILRKYGDITRGSILKSIEAKAAFLQLVAEVVERLHSHTLDTIGAHEMQVV
QKWTDDAAAVGFHVEWLQHRIKKVFAISKYRESLTQLNEIKEQIAAAKIALLEMQLQQII
LKKEIDSVKDEMDREDLCRSNLSEGRVPAVGSTIAVSSSTSAPAQTPSALVVASSSGTTS
TTSAVLASAPKLPSEITGKTVEEIIKXXXRTGKFRKQANAIAEWDRRILQNRDILLKLES
EVAKVVETQGSLERQLELIETHQDEVDKALQSMEEEAERIYREERGLLLDDDAASTRDAM
YEQAELIERELEQMTEHIKSIISTLNASHGGELEAADGMTPLDVVVRILNNQLSSLMWID
EKAEEFSARIQKLASEGSAADRELTGPKLWLT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgggtcttatccaaatgaatcaaaatgtggagtctgactcacctaaagccctttcctcc
tccaaacccctaaaatccaatcttccaaattcccccaaatttcaaaacccctttcctttc
cccccacaaccagaacccacatccacctcgctgcctaattctcaccgccacacccccatc
aaaactccatcgccgccgctatggctggcacaggcttctactttggcttctctaacctcc
tccgcgccttcgtttggattcggttctggaactacgtcgtccgccttttccgcaccttct
tttggcttcggttctgggacaacgtcgtccgctgcctccactccttcttttggcttcggt
tctggaacgtcgtcgtccgcctccactactccttcttttggcttcggttctggaacgtca
tcctccgctgcctccgctccttcgtttggattcggtactggaacaacgtcgtccacctcc
agcagcccgttcggcgcttcacctctctttggttcctcctctgcctccgcaacgacgtcc
tccgccaccgcgaccaccaccccatttggcgcttcccctctctttgggtcctcatcgagt
gcggccccaacttctagtttattcggttcctcttctggtacaaccaccactttgaatccg
ctcggctcctcctcatccggcagtccgcctgcttccagttttttcggatccggatcaggc
ctttctcccagcatttttgggtcaacttctggaggagctcctacctctagcatttttgga
tcttcagcacctggtactggccaaactactagtccgtttggctctaactcttcaactgct
gctccatcatctccctcgccttctccatctccattaggcacatcaacactatttggatcc
cctgctcctggttcctcaacctcattcttgtcaagtgctccaactcccagcctctttggg
tcttcctcagcagcttcttcgagcagtaccagcacacatttatttgggtctgctccagcc
ccagcatccaatctatttggagcggctatatcagcgtcaactccagccaccactgcacca
gcatttgggtctattccaaccccaacgacagggatatttggatcatccacatcagcgtct
gctagtgggactacttcacccctgttcatgtccagtcctgcccctggtggagtcatgttc
ggatcctccacttcctcatccaccactgctaccacaggcgccacagcatccttgtttggg
cagagttctggatcaacttcgggtctttttgggtcatcatcggctttgtttgggtcatct
tcatcagccccactatttggtacctcgttgagctctacatctacagctttgtcattcccc
ctgtccaccaatacttcaagttcagcttcacccactagtgcttcaacctcaacttcttct
gctgctggattttcattcccagcatcatcagcttcatcaacacctggattttcattttct
acagctcctagctctacttcttcgggtttttcatttctaaaaagcaccagtagttctgta
gcttcagcatcagccgcagtatcttcatcatctacacctggtttttcatttggaactacg
gggattcagtcatctgcttcagcgtcatctctttctagtgccccgacttcaaaactcagt
acatttggtaccactccttcttctctgttttcaacagttacaactactacaacgaccagt
gcttcagctcctgctgcagctagtgtgtcttctgctgcttcagctggttttcctggtttt
ggtacaactactacacctgcatcaacctctggtaacacaggttctttatctctatcattg
aaatctcctgtaactgctgcctcatcagcatcacaaacacaatcaacagccgtgctgcct
tcttttgtgttacatgtgggggttgtagatgaagatgaggaaggggattccataagcaag
gatggggatgctgcacttggtgtttctgcatgttctgttacaactactgccaaaactgtt
attaaggaaaagacgtcccttacagaccatgtcgattcttctactactgcatcggtttca
attgtgcaagcttgttctcctgttgaagatagtgaaaggttgaaatatgaggcaacacct
gatgcaaagaagaatccaaccaaggaggtggttgttgacgtttctgaatactcatctact
gaatctgaagctcttgatggaaatgagttaggtcatccagcgtgcggaaggctcatgtct
gtcgagttccctctgtgtacagagtgtgtgcaattgaatttatgtctgcaaaataccctc
tgccaccggaaagcccacctcattaagcaaatattgagaaaatatggtgatatcacaagg
ggaagcattctcaagagtatagaggctaaggcagcttttcttcagctggtggctgaagtc
gttgaaaggcttcatagccataccctagacactattggtgctcatgaaatgcaagtcgta
cagaagtggacggatgatgcagctgctgttgggtttcatgtggaatggttgcagcacaga
attaaaaaagtatttgcaatctccaaatacagagagagtttgacgcagttgaatgagata
aaagagcaaattgctgctgccaagatagctttgttggagatgcagcttcaacagataatt
ttgaagaaagagatagattctgtaaaggatgaaatggatagggaggacctctgtagatct
aatctatctgaagggcgtgtcccagctgtgggttcgacaattgcagtgagttcaagtacc
agtgctcctgctcaaacaccatcagctcttgttgtagcttccagtagtgggactacttca
acaacaagtgcagttttagcctctgcaccaaagttaccatctgaaatcactgggaaaaca
gttgaggaaatcatcaaggnnnnnnnncgtactgggaagtttcggaaacaagctaatgct
attgctgagtgggatcgcaggattctgcagaatcgagatattcttctaaagcttgagagt
gaagttgcaaaagtggttgagacgcaaggtagtttggagaggcaactggagctgattgaa
actcatcaagatgaggttgacaaggcattgcaaagtatggaggaggaagctgagcgaata
tacagagaggaacgaggactgcttcttgacgacgatgctgcatccacaagagatgcaatg
tatgagcaggctgaattgatcgagcgggaacttgagcagatgacagaacatattaaatcg
attataagtactcttaatgccagtcacggtggagagcttgaggcagccgatggaatgact
ccattggatgttgttgttcgaatcttaaacaatcaattgagctcattgatgtggattgat
gagaaggcagaggaattctctgcacgtattcagaagcttgctagcgaagggtctgcagca
gatcgagaattgacgggtccgaagctttggctaacctga
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