Sesamum indicum (sesame): 105174226
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Entry
105174226 CDS
T04135
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38 isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105174226
03015 mRNA surveillance pathway
105174226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105174226
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105174226
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105174226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
105174226
NCBI-ProteinID:
XP_011094554
UniProt:
A0A6I9U5R9
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Position
LG11:12819863..12824254
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AA seq
491 aa
AA seq
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MADNESATASTTDQEASKSTETKRWADVAEEEQDVAEASSTEPKLDSLAIDDSRLGHSTL
TDPDDSSIEAVTSGDTPYTSAKRFEDLNLSPELLKGLYVEMKFEKPSKIQAISLPMILTP
PNKNLIAQAHNGSGKTTCFVLGMLSRVDPKLTAPQALCICPTRELAIQNMEVLLKMGKFT
GITSELAIPADPANYIPIQKRPPITAQVIIGTPGTICKWMLAKKLGMSQMKILVFDEADH
MLAESGFRDDSVKIMKAIAKANFSCQVLLFSATFDDAVKAFVSKIVEEIFVRDYNQMFVK
KEELSLESVKQYKVHCPDELSKIMVIKDRILELGEKVGQTIIFVRSRNSAAMLHKSLVSL
GYEVTTIQGALKQEDRDKIIKEFKEGLTQVLISTDLLARGFDQKQVNLVVNFDLPVRYDR
PTEPDYEVYLHRVGRAGRFGRKGAVFNLLCDDRDDLIMGKIEKYFNAQIAEVAPWNSEKE
FEVALENAGLL
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacgagtccgcaaccgcctccaccaccgatcaggaagcatcgaagtctacg
gaaacgaagcggtgggctgatgttgctgaggaggagcaagatgtagccgaagcttcctcc
acagaacctaaattagactccttggctatcgacgactccagattaggtcacagcacgctc
accgatcccgacgactcaagcattgaagctgttacatccggggacactccatatacatca
gctaagagatttgaggacttgaacttatcaccggaattattgaagggtctgtatgttgag
atgaagtttgagaaacctagtaagattcaggcgattagtttgcccatgatcctgactcct
ccaaacaagaatttaatagctcaggctcacaatgggtccgggaagacaacttgttttgtg
cttggcatgttgagtcgtgttgatccaaaactgacagctccccaggctctctgtatctgc
cccacgagagagttagccattcagaatatggaagtgctgctgaagatggggaagttcact
gggataacctcagaattagccataccagctgatcctgcaaactatattccaatccagaag
aggccacctattacagcgcaagtaattattggcacacctggtacgatatgtaagtggatg
ttagcaaaaaaactgggcatgagtcaaatgaagattcttgtgtttgatgaggctgaccac
atgttggcagagagtggctttcgagatgattcagtgaagataatgaaggcaattgcaaaa
gccaatttcagttgtcaggtgctgctgttctcggctacctttgatgatgctgtcaaggct
tttgtatctaaaatagttgaggaaatctttgtcagagattataaccaaatgtttgtcaaa
aaggaagaattatcgttggagtctgtaaaacagtataaggtacactgtcctgatgagctt
tcgaagatcatggtgattaaggaccggatacttgaacttggagagaaggtggggcagaca
attatatttgttcgctccaggaatagtgcagctatgctgcacaaatcattagtcagcctt
ggctatgaggttactactattcaaggtgctctgaagcaagaggatcgggataaaattata
aaagagttcaaggaagggctgactcaagttctgatatcaactgatcttctagctcgaggc
tttgaccagaaacaggtaaatttggttgttaattttgatcttcctgtgagatatgataga
cctactgagcctgactatgaagtttacttgcatcgggtgggtagagcaggacgctttgga
cgcaaaggtgctgtattcaacttgctttgcgacgatagagatgatttgattatgggcaag
attgagaaatactttaacgcccaaatagctgaggtggccccatggaatagcgagaaggaa
tttgaggtcgctctagagaatgcagggctactatga
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