Sesamum indicum (sesame): 105174347
Help
Entry
105174347 CDS
T04135
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105174347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sind03041
]
105174347
Enzymes [BR:
sind01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105174347
Spliceosome [BR:
sind03041
]
Complex A
U2 snRNP components
U2 related factors
105174347
Complex B
105174347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
105174347
NCBI-ProteinID:
XP_011094726
UniProt:
A0A6I9U659
LinkDB
All DBs
Position
LG11:13557340..13561688
Genome browser
AA seq
1154 aa
AA seq
DB search
MEELKSKSRREGSEKEEMKVSHHKEDRNREKERNGERQRDRERDKDRDSRHDREKSVDDK
HRDREKHKSKRREKEREQERTRSRDDERARDKAKGREKDRDDREVDRDREDREKDRDREK
ERARDRDRARENREREKEREREKERERERERREREREREKEKERERKEREKIHEREKRRD
RDRSYSSDEDVARDHERKRRRREEDHLDRDVEPSSKTNRRRDDSQDSSPRRKGDADPEVR
KEKTREEDFAEEQKRLDEEMEKRRRRVQEWQELRRKKEESEKETLGVPGTHEPKSGKAWT
LEGESDDEEAGPEGKVAMDVDEDGAGKLSGDDENGMSVDVDNEATLQSGADDAAGDDEID
PLDAFMNSMVLPEVEKLNSVVPPVPNDSGPELVERNGKPNLEHPKKGMNKSMGRIIPGEN
SDSDYGDLENDEDPLEDEDDEEFMKRVKKTKVEKLSIVDHSKIDYPPFRKNFYIEVKEIS
RMTPEEVASYRKQLELKIHGKDVPKPVKTWHQTGLSTKILDTIKKLNYEKPMPIQAQALP
IIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSD
IKKFAKVMGLSCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVT
YLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG
GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLIRSGY
PCLSLHGAKDQTDRESTIADFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYV
HRVGRTGRAGRKGCAITFVSEEDARYAPDLVKALELSEQSVPDDLRALADGFMAKVNQGL
EQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGVRKAGGDISHQ
AVLAQAAALAAASKVTVPSVPTPISAAQLIPNGGLPVSLPSVLGLTIPGVAAVVPGAGLP
VGSSDGAARAAALAAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGP
ISEWTGAAITTRGQYYPPGRIPGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDITNQAS
SLPGSAQPGRYSVV
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctgaaaagcaaatctcggagggagggctctgaaaaggaagaaatgaaagta
agtcaccataaagaggatcgtaatcgtgagaaggagaggaatggagagaggcagagggac
agggagagggacaaagaccgggatagccgccatgatagagaaaagagtgttgatgacaag
cacagggacagagaaaagcacaagagtaagcgccgggaaaaggaacgagagcaggaaaga
accaggagccgtgatgatgaaagggctcgagacaaggccaaaggtagagaaaaggacagg
gatgatagagaagttgacagagacagggaagaccgggagaaggacagggacagggagaaa
gaaagggcacgagatagggatagagcacgggagaatagagagagagagaaagagagggag
agggagaaagaaagagaaagagagagggagaggagggagagggagagggagagggagaag
gaaaaagagagggaaagaaaagagagagaaaaaatacatgaaagggaaaaacgccgagat
agggataggtcgtacagtagtgatgaagatgttgctagggatcatgagaggaaaaggcgc
aggagagaagaagatcatctggacagggatgtggaaccaagcagcaagacaaatcggcgt
agggatgatagtcaagacagtagcccgcggagaaagggagatgcagacccagaagtcagg
aaagaaaagacacgggaagaggattttgctgaagagcaaaagagattagatgaggagatg
gagaagcggagacggagagttcaggagtggcaagaactaagaaggaagaaggaagaatct
gagaaagaaacacttggggttccagggactcatgaacccaagtctggcaaggcatggact
ctggagggggaatctgatgatgaagaagctggccctgagggaaaagtagccatggatgtg
gatgaggatggagctggaaaactcagtggcgatgatgaaaatggcatgtctgttgatgtt
gataatgaggctactttgcagagtggtgctgacgatgctgctggggatgatgaaattgat
cctttagatgcatttatgaattctatggtgttgcctgaagtagagaagctaaacagtgtt
gtgcctcctgttccaaatgactctggtcctgaattggttgaaagaaatggtaaaccaaac
ttggaacatcctaaaaaggggatgaacaaatctatgggaagaattattcctggagaaaat
tctgattcagactatggagaccttgaaaatgatgaagatcctttggaggatgaagatgat
gaagaatttatgaaacgagtgaagaagaccaaagttgagaagctgtcaatagttgatcat
tcaaaaattgattatcctcccttccggaagaatttctatattgaagtgaaggaaatctcc
aggatgacacctgaagaggtcgcttcatacaggaaacaactggaattaaagatacatgga
aaggatgtcccaaaacctgtcaagacctggcatcagactggattgtcaactaagattttg
gatactataaagaagttgaattatgaaaaaccgatgccaattcaagcacaggccttgcct
ataattatgagcggtcgagactgcattggtattgcaaaaacaggatctggcaaaactcta
gcatttgtgttacccatgttgaggcacattaaggaccaacctccattgatgtctggagat
ggccctattggccttattatggctcccacaagagagcttgtccagcaaatccacagtgat
atcaagaagtttgcaaaggtgatgggtctcagctgtgttcctgtatatggaggttctggg
gtcgctcagcagattagtgagttgaaacgaggggctgagattgttgtttgtaccccaggt
aggatgattgacatattatgcactagtggtggtaagattacaaatctgcgtcgtgtcact
tatttggtcatggatgaagctgatcgaatgtttgatatgggttttgaacctcagattacg
agaattgttcaaaatacaagaccagaccgtcaaaccgtgctattttctgccactttccct
cgtcaggttgaaattctggctcgtaaagtgttgaataaacctgttgaaatacaggtaggt
gggaggagtgttgtgaacaaggatataacccaactagttgaggtaagaccagaaagtgat
aggttccttagactcttagaactacttggagaatggtatgagaagggcaaaattttgatc
tttgtacattcacaagagaaatgcgatgcattgtttagggatttgattaggtctggatat
ccttgcctgtcacttcacggagcaaaggatcagacagaccgtgaatccaccatagctgat
tttaagagtaatgtgtgcaatttattgattgctacgagtgttgctgctagaggtttagat
gtcaaggagctcgaattagtcattaactttgatgttcctaaccattatgaggattatgtt
catcgggttggtagaacaggccgagctggtagaaaaggctgtgctatcacatttgtttct
gaggaagatgcaagatatgcaccagatcttgtaaaagcactggaattatcggaacagagt
gttccagatgaccttagagctcttgctgatggatttatggcgaaggttaatcaagggctt
gagcaagcccatgggactggttatggtggcagtggttttaaatttaatgaagaggaggat
gaggtgaggagagctgcaaagaaagctcaggcaaaagagtatggatttgaggaagataaa
tcagactcagaagatgaagatgaaggagttagaaaagcaggtggtgacatctctcaccaa
gcagtccttgctcaggctgcagctcttgctgctgcttccaaagtgactgttccttcagtc
ccaacacctatctcagcagctcagctcattcctaatggtggattacctgtttctctgcct
agtgttcttggtttgacaattccgggcgtggcggcagttgtacctggggctggactgcca
gttggcagcagcgatggggcagctagggcagcagctctggcagctgcaatgaatttgcag
cataacttggcaaagattcaggctgatgccatgcctgaacattatgaagcagaattggaa
ataaatgattttcctcaaaatgctcgttggaaggtgacacacaaggaaactctgggcccg
atctctgaatggactggagctgccatcacaactagagggcaatactatccaccaggcagg
attccaggaccaggggaaagaaagctttacttgttcattgagggccctactgagcaatcc
gtcaagagggcaaaagcagagctaaagcgtgtgttggaggatatcacaaatcaagcatca
tcacttccaggttcagcacagcctggccggtattctgttgtctaa
DBGET
integrated database retrieval system
