Sesamum indicum (sesame): 105174569 Help Entry 105174569         CDS       T04135                                  Name (RefSeq) symplekin   KO K06100   symplekin Organism sind  Sesamum indicum (sesame) Pathway sind03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:sind00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     105174569  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:sind03021]     105174569    03019 Messenger RNA biogenesis [BR:sind03019]     105174569 Transcription machinery [BR:sind03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      105174569 Messenger RNA biogenesis [BR:sind03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      105174569     U7-dependent histone pre-mRNA processing factors      105174569 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 Adaptin_N Motif Other DBs NCBI-GeneID:  105174569 NCBI-ProteinID:  XP_011095015 UniProt:  A0A6I9U3J7 LinkDB All DBs Position LG11:14701185..14716083 Genome browser AA seq 1346 aa AA seqDB search MVGVMAAVSRAKLASRINSIKQSGSADMGTKLDKLRRLRDELLAADSVLLVDFLSPILDL LSDRSSPVRKFIIQMIGEIGLKHSELLPDIIPALIAALKDDTPAVARQAITCGVDIFRCS LVKVAIQGLYSSEFNESLKSSWECVLKFRDEIYSMAFKVGNDGRRLPALKFVESMVLLYT PDPNGSLEPPPDHVSEGKFEEFNVSWLRGGHPILNVRDLSAEASQNLGLLLDQLRFPSLK SHSYLVMIVLIKSLSTVARKRPAFYGRILPVLLGLDPSSCTSKGLHLAGVHHALRSAFES CLNCTHPGAAPWRDRLVSALKEIKVGRPTEQARNEISENKGREEWPGDAYVVQIHENEKP SVAFVTEHKNAGRKRTGVLDSSEFTQDDMSGKRARSTPDNLKEPGHEISGRQEGVSSSGQ TPSREDSDSGPVQQLVAMFAALVAQGEKASASLEILISSISADLLAEVVMVNLRNLPLQT PTSEADEEPLTDMVAFPDTHIKHLSLLLRDILSESIPLEKETGTEDPHHSVSSGLQQTQE EEEPPATIADSNVAYDDLNRARQETVHVNESVSPEEIPSAMEAGYGAITSVVIENEGVGN EIPGLALSTEDDALPEDAAVFPRALTELEDANLTDLNDANQETFTNLGRMPIELDKTQIE LAQSFSTDRSEELSPKAAITDTNNMNSSTATSVGLSSQLVLPKISAPVICLADEQKDQLQ QLAFVRIVDAYKQVTVAGGSEVRFSILAHSGMEFPLELDPWKLLKTHILSDYVNHEGHEL TLRVLYRLFGEAEEDRDFFTSTTATSVYETFLLQVAETLRDSFPASDKSLSRLLGEVPYL PKSIFEMLESLCSPGSSDNDDREMQGGDRVTQGLSTVWSLILTRPPIRDACLKIALKSAV HHLEEVRMKAIRLVANKLYPLSSISEKIEDFAKEMLLSVVGDNQIEVEKEADGIHAELQK DENPSSEKQSVSLAVKEIAVGNHQNSASESIPLSMIAEVQRCMSLYFALCTKKHSLFRQI FDVYKGTSKAAKQAVHHQIPLLVRTIGSSRELLDILSDPPTGSEGLITQVVHTLTDGTVP SPDLLTTVKRLYDTKLKDIDILIPILAFLPKDEVLLLFPQLVNAPLDKFQVALTRVLQGL NHSPPVLTPAEALIAIHGIDPDRDGIPLKKVTDACNACFEQRHIFSQQVLAKVLNQLVEQ IPLPLLFMRTVLQAIGAFPSLVEFIMEILSRLVSKQIWKYPKLWVGFVKCALLTKPQSFS VLLQLPTAQLENALNRTPALKAPLVAHASQPHIRSSLPRSTLVALGLVSEPQTSNQTQPT QTQTAETGNSEMEAATDKSKESSTAS NT seq 4041 nt NT seq  +upstreamnt  +downstreamnt atggtgggagtgatggcggcggtttccagagcgaaactcgctagccgaatcaactcaatt aagcaaagcggttccgctgacatggggacgaagctggacaagttgcggaggctgcgtgac gagctcttagccgcggattctgtgctgctcgtggacttcctctcccctattcttgacctc ctttcagaccgttctagcccagtccgcaaattcattattcagatgattggtgaaattggt ttgaagcactcggagttgttacctgatattataccagcgctgatagctgctttgaaagat gatacaccagctgttgctcgacaggccatcacatgcggtgttgatatattccgctgttct ctggtcaaagttgccatccagggcttgtactcaagtgagttcaacgaatcactgaaatca tcatgggaatgtgtgctaaagtttagagatgaaatatactccatggcctttaaggtgggg aatgatggtagaagattgcctgcattgaagtttgtggaatcaatggtgctactttatacc cctgatcctaatggctctttggagccaccacctgatcatgtttctgaagggaagtttgaa gaattcaatgtctcatggctgcgcggtggacatccaatactcaatgtcagagatctatca gccgaagcaagccaaaatttgggtctactgctggatcagctgagattcccttctctgaaa tcacatagttatttggtgatgattgtgctaattaaaagtctttcaacagttgcaaggaag aggcctgccttttatggtcgcatactgccagttttacttggattggacccttcaagctgt actagcaaaggcttgcatcttgctggggttcatcatgctctgagaagtgcttttgagtct tgtttgaactgtacacaccctggtgctgcaccgtggcgggatcgccttgttagtgcactt aaagaaattaaagttggaagaccaactgaacaggctagaaatgaaatatcagagaacaag ggaagagaagagtggccaggggatgcatatgtggttcaaattcatgagaatgaaaaacct tctgtagcatttgtaactgaacataaaaatgctggtagaaaaagaactggagtgctagat tcatcagaatttactcaggatgacatgtctggaaagcgtgccaggtcaacacctgacaac ttaaaggaaccaggacatgaaatcagcgggagacaggagggggtctcttctagtgggcaa acaccatccagagaggattcagatagtggacctgtacagcagcttgtggcaatgtttgct gcattggttgctcagggcgagaaagccagtgcttctttggagattctcatctctagcata tcagctgacttgttagctgaagtagttatggttaatttgcggaatcttcctctgcaaacc cctacatctgaagcggatgaagagccacttacagatatggttgcctttcctgatacccac atcaaacatttgtctttgttgcttagggacatactttcagaatctattcctctggagaaa gaaacgggaaccgaggatcctcatcactcggtatctagtgggcttcagcaaactcaagaa gaagaggaaccgccggcgactattgctgatagtaatgttgcatatgatgatttgaatcgt gcaaggcaagaaacagtgcatgtcaatgagtctgtttcccctgaagagattccatctgca atggaggctggttatggagcgatcacttctgtagtcattgaaaatgaaggtgtgggaaat gaaatacctggacttgctttatccactgaggatgatgctttgcctgaagatgctgctgtt tttccaagggccttgactgagttagaagatgccaatctgactgatttaaatgatgccaat caggaaacatttactaatttaggtaggatgccaatagaattagacaagacgcagatagaa ttagctcaatcattctctaccgatcggtctgaggagcttagccctaaagcagcaatcacg gacacaaataacatgaattcctctactgcaacttctgttgggttatcttcccagttggtt ctgcccaagatatctgcccctgttatctgccttgcggatgaacaaaaagaccagttacaa caactggcttttgtgcgcattgttgatgcttataagcaggttactgttgctggagggtct gaagtccgtttttcgattcttgcccattcaggaatggagtttccattggagctcgaccca tggaagttactgaaaacacatatactgtcagactatgtaaatcatgaggggcacgagtta acattgcgcgtgctatacaggttgtttggtgaggcagaagaagaccgtgacttttttact tcgacaactgctacatctgtatatgaaacttttcttctccaagtggcagaaacactgaga gattcttttccagcttctgacaaatctttgagtagattgcttggtgaagtcccatatctg ccaaagtcgatatttgaaatgttggagtccttatgttctcctggtagtagtgataatgat gatagggagatgcagggtggagatcgagttacccaagggctgagtactgtatggagcctg attttgacgagacctcctattcgagatgcttgcctcaaaattgctttgaagagtgcagtt catcacttggaagaagtacgaatgaaagctatacgtctggtggcgaataagctttatcct ttatcatccatatctgaaaaaatcgaagattttgccaaggaaatgttgctatcagttgta ggtgataatcaaattgaagtggaaaaagaggctgatggaatccatgctgaactacaaaag gatgagaatccttcaagtgaaaaacagtcggtgagtttggcagttaaagagatcgccgtt ggtaatcatcagaactcagcatctgaaagcattccattgtctatgatagctgaggtgcaa cgttgcatgtccctatattttgcattgtgtacaaagaaacattcccttttccggcaaata tttgatgtctataaaggcacatccaaggccgcaaagcaggcagttcatcatcaaatcccc ttacttgttcgaactattggctcgtccagagagctccttgatattttatcagatccacca actggaagtgaagggcttataactcaggttgtgcatacacttacagatggaacagttcct tctccggatttattaactactgttaagaggttatacgatacaaagctaaaggatatagat attcttattccaatattagcattcctcccaaaagatgaggttttactccttttccctcag cttgttaatgcacctttggataagttccaagttgcgcttactcgtgttcttcaggggcta aatcattctccaccagtgctcactccagccgaagcactaattgcgatccatgggattgat cctgatagagatggaattccattgaaaaaggtcacagatgcctgcaatgcttgttttgag cagcggcatatattttctcagcaagttctggccaaagtcttgaatcagttggttgagcaa attcctcttcccttgttatttatgcgcacggtattgcaggcaattggtgcttttccttct ttggtggaattcattatggagatcctttcccgtcttgtaagcaagcagatatggaaatat ccaaagctgtgggtgggattcgtgaagtgcgctcttttgacaaagccacagtctttcagt gttctgcttcagctacctacagcacagcttgaaaatgctttaaatagaactcctgctctc aaggctcccttagttgcccatgcaagccaacctcacataagatcttcgcttccaaggtct accttagtggctcttggcttagtgtcagagcctcaaacgtctaatcagacacagccaact caaactcagactgcagagacaggcaattcagagatggaagcagcgacggataagtcgaaa gaatcatctactgccagttga

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