Sesamum indicum (sesame): 105174887
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Entry
105174887 CDS
T04135
Name
(RefSeq) cell differentiation protein RCD1 homolog
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105174887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105174887
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105174887
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
DUF2249
Motif
Other DBs
NCBI-GeneID:
105174887
NCBI-ProteinID:
XP_011095434
UniProt:
A0A6I9U4F5
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Position
LG12:963789..968441
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AA seq
314 aa
AA seq
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MANLPPPLNLKAAPFEVPSSSSFGAGKERKMQSAEQLVLDLCNPDLRENALLELSKKREL
FQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRM
LFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCL
RTMEMGSELSKTVATFIVQKILLDDVGLEYICTTAERFFAVGRVLGNMVAALAEQPSSRL
LKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVQGPRV
ALQAGGGFDHMMVN
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacttacctccgcctctgaacctgaaagccgccccctttgaggtgcccagcagc
tcttcttttggcgcgggtaaagaacggaaaatgcaatcggcggagcagcttgttctcgat
ctttgtaaccctgatctccgggaaaatgcccttctcgaactctccaagaagagagaactg
tttcaagatttggctccactactgtggaactcctttggtacaattgctgctcttctgcag
gaaatagtttccatctacccagttttatcaccaccgaacctaactcctgcacagtcaaac
agagtttgcaatgcacttgctcttcttcagtgtgtggcctcacatccagatactagaatg
ttgttcctgaatgcccacatccctctatatctttatccttttcttaatacaaccagcaaa
tcgaggccctttgagtacttgaggcttacgagtctaggagtcattggtgcacttgtgaag
gttgacgacactgaagttatcagtttccttctctctactgagatcattcccttgtgctta
cgaacaatggagatgggaagtgaattgtccaaaacagtagcaacattcattgtgcagaag
attttgcttgacgatgttggtttagagtacatatgcacaacagcggagcgcttctttgct
gtaggtagggtgctgggaaacatggttgctgcacttgctgaacagccttcttctcggctt
ttaaagcacattatcaggtgctacctcagattgtcagacaacccaagagcttgtgacgcc
cttagaagttgtctgcccgacatgcttagagatgcgacctttagtagctgtcttcgggag
gatccaactacaagaaggtggctacagcagttgcttcataatgtgcaaggacctcgtgta
gcgttgcaagcaggaggtgggttcgatcacatgatggtcaattga
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