Sesamum indicum (sesame): 105175012
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Entry
105175012 CDS
T04135
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105175012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105175012
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105175012
mRNA degradation factors
5'-3' decay
Decapping complex
105175012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
GerPC
Motif
Other DBs
NCBI-GeneID:
105175012
NCBI-ProteinID:
XP_011095609
UniProt:
A0A6I9UCD5
LinkDB
All DBs
Position
LG12:1686256..1695510
Genome browser
AA seq
1441 aa
AA seq
DB search
MASPGNPTPPGGGPFDMHKLFNPSTTPPPASAPPANPNHQNFTNNAGNANSNSNLVSAPF
PPPSASYPPPTGAGGGPYSYSPQTSPFHYHHPVYTPYSNPSPPHQEFANVHPQRSMSYPT
PPLQPQVQTPTSSHQNNFQNPPNPQNPNNPGARLMALLSAPPSTLEVPQQPAMPMPQIHP
TSSSGSEFSAAQNVNILPSGSGLVISHQGPVIRMPSSKLPKGRHLNGDHLVYDIDVRLPA
EFQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQ
RVTDMAFFAEDVHLLASASVDGRVYVWKITEGPDEEDKPQITGRSVVAIQITGDGESVHP
RVCWHCHKQEVLVVGIGKRVLKIDTTKVGKGEKFSAEEPLKCPIDKLIDGIQLVGSHDGE
VTDLSMCQWMTTRLVSASVDGTIKIWEDRKALPIAVLRPHDSQPVNSVTFLAAPHRPDHI
ILITGGPLNREIKIWISASEEGWLLPSDAESWHCTQTLELKSSAARVEEAFFNQVVALPQ
AGLLLLANAKRNAIYAVHLEYGPNPAATCFDYIAEFTVTMPILSFTGTSELLPHGEQIVQ
VYCVQTQAIQQYALDLSQCLPPPTENLVYEKSDSSVSRDAAIEGLASLEPSSSKVAEISM
SSSAPKASIHESGLENAPTVRYPVSAAAGESPTIQEFPSSSMESKPVNSSTVPDDSDMSF
ATSPPLPLSPRVSRTLSGRRNSNFEHGPSVNDRSAEQKMVEYSVDRQMDTIHTNLSDVAS
LNDDSRNDDNKLSQDDIPMALNHPIKFKHPTHLVTPAEILMASSSSEANHTNEPLSESEL
SIQDVVISNDTRNIEVEVKVVGETRFSQNNDIGSREELHTGVSDNKEKSFCSQASDLGME
MARKCRALLPETYTVEEARQFSGAAGTDADTQSSTIVENEVSDSDKDVTRKVVDSTTSVA
AQQPAPSTKGKKQKGKNAQGSGPSSPSRSAFNSTDSSVEPGISSSIPPIETAVSQIFSMQ
EMMTQLVTMQKEMQKQIGSMVAVPVSKESKRLEAALGRSVEKAVKTNSDALWARFQEENA
KQEKAAKERMQQLTNMISNSLNKDLPAIIEKTVKRELTTLGPSVARTITPTIEKTISTSI
VESFQKGVGDKAVNQLEKSVSSKLEATVARQIQAQFQTSGKQALQETLKSSLEVSVVPAF
EMSCRTMFEQVDATFQKGMVEHTTAAQQQFEAAHSPLALALRDAINSASSMTQTLSSELL
DGQRKLLALAVAGANSKAPNPLISQLSNGPLAGLHEKLEVPLDPTKELSRLIAERKYEEA
FTAALQRSDVAIVSWLCSQVDLPGILSMNPLPLSQGVLLSLLQQLACDISKETSRKLTWM
REVLSAINPTDPMIVVHVRPIFEQVYQILNHHRSLPTTSGAELSNIRLIMHVINSMLMSS
K
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccagggaatccaactccaccaggcggaggtccctttgatatgcataagtta
ttcaacccttccaccactccgccgcctgcctctgctccccccgcgaaccctaatcatcaa
aacttcaccaataatgctggtaatgctaatagtaatagtaatttggtttcagcccctttc
ccacccccttcggcctcttatcctccacccaccggcgcaggcggcgggccatactcgtat
tcccctcaaacatccccatttcattaccatcacccagtgtacaccccgtactccaatccc
tcgccgccccaccaggaattcgctaacgtgcaccctcagaggtcaatgtcttatcctacg
ccaccgctccaaccccaagtgcaaacacctacttcatcgcaccagaacaattttcaaaac
ccccctaatccccagaaccctaataaccccggggctcgattgatggcgttgttgagtgcg
ccaccttccacgctggaggttcctcagcagccggcgatgccaatgcctcaaatccacccc
acctcctcttcgggctcggaattttctgcagcacaaaacgtgaacatcttgccctcgggc
tcaggtctagtgatttcacatcagggccctgtgattcggatgccgagtagcaagctcccc
aagggacggcatctgaacggggatcatcttgtttatgatatagatgttagattgcctgcg
gagtttcagcctcagcttgaggttacacccattacaaaatatgggtctgatccaggactt
gttctggggaggcaaattgcggttaacaagacatatatatgttatgggctcaagttgggg
gctatccgggtgctcaatattaacactgccttgagatccttgcttaagggtctagctcag
agggtcacagacatggctttctttgctgaggatgttcaccttttggcgagtgcaagtgtt
gatggccgggtttatgtgtggaagatcactgaaggcccggatgaagaagacaagcctcaa
attactggaaggagtgttgttgccattcaaattacaggggatggggaatctgtccatcct
agagtttgttggcattgtcataaacaggaagttcttgtagtgggaattggcaaacgtgtt
ttgaagattgataccacgaaagtgggaaaaggtgaaaagttttcagcggaggaacccctc
aaatgtcccattgacaagttgattgatgggatccaacttgttggcagccatgatggtgaa
gtgactgacctgtcaatgtgccaatggatgaccactcgcttggtatctgcttcagtggat
ggaacgataaaaatttgggaggatcgaaaggcacttccaattgcagttctccgaccacat
gatagccaacctgttaattctgtcacctttttggctgctccccatcgtccggatcatatc
attcttatcactgggggcccactaaaccgggaaattaaaatatggatatcagcaagtgaa
gaaggttggttgcttcccagtgatgcggaatcatggcattgtactcagacgttggaacta
aaaagttcagcggctcgagtggaggaagctttcttcaatcaagtagtggccttgccgcaa
gctggccttctcttattagcaaatgccaagaggaatgctatatatgccgtgcacttggaa
tatggtcctaaccctgcagcaacgtgcttcgattacatagcagaattcactgtcactatg
cctatactgagttttacagggacaagcgaattactacctcatggtgaacaaattgttcaa
gtgtattgtgtccagacacaggctattcaacagtatgcgttggacttgtcacagtgtctg
cctcccccgacggaaaatttagtctatgagaagtcagattctagtgtctcacgtgatgct
gcaattgaaggacttgccagtttggagccttctagcagtaaagtggcagagatatctatg
tctagttcagcacccaaagcatctatacatgagagtggcttggagaatgcacctacagtt
agataccctgttagcgctgctgctggtgagtcaccaaccatacaggagtttccttcctca
agtatggagagcaaaccagttaattcgtccacagttcctgatgatagtgatatgtctttt
gctacttcacctccactccctttgagtcccagggtgtccagaacactttctggtcgtaga
aatagcaactttgagcatggtccttcagttaatgatcgtagtgcagaacagaaaatggtt
gaatattcagttgatagacaaatggatactattcatactaatttgtctgatgttgcttca
ttgaatgatgattcaaggaatgatgacaataaactttctcaagatgatattcccatggcc
ctcaaccatccgattaagttcaagcatcccactcatttggtaactcctgctgagatattg
atggctagttcgtcctctgaggcgaaccacacaaatgagcccttaagtgagagtgaactg
agtatccaagatgtggtaattagcaatgatacaagaaacattgaggtagaggtcaaagtt
gtgggtgaaacaagattcagtcaaaataacgatattgggtctcgagaagaacttcacacg
ggtgtatcagataataaggaaaaatcattttgctcacaagcctctgatcttggaatggag
atggctcgaaaatgtcgtgccttattgcctgaaacttatactgtggaggaagctaggcag
tttagtggggctgctggaactgatgcagatacccaatcctctactatagtagaaaatgaa
gtgagtgactctgataaggatgttaccaggaaggttgttgattctacaacttctgtggca
gctcaacaacctgccccaagtacaaaaggcaaaaagcagaagggaaagaatgctcaagga
tcaggaccatcttcaccatcacgcagtgctttcaattctacagattcttctgttgaacca
ggcattagctctagtattcctcctatagaaaccgctgtttcacaaattttttccatgcaa
gagatgatgactcagcttgtgactatgcaaaaagaaatgcagaagcagataggatcaatg
gttgctgtcccagtttccaaagaaagcaaaagacttgaggcagctttaggacggagtgtg
gagaaggctgtcaaaactaattctgatgctttgtgggctcgtttccaagaagagaatgca
aaacaggaaaaggcagcaaaggagcggatgcagcaactgacaaatatgatcagcaatagc
ttaaacaaagacttgcctgctattatagagaaaactgtcaagagagaactgaccacactt
gggccatccgtggcacgaacgatcactcccaccattgaaaaaacaatatctacttccatc
gtagagagcttccagaaaggggttggtgataaagctgttaatcaactggagaaatcagtc
agctcaaaacttgaagccacagttgctagacaaatccaagctcaatttcaaacttctggc
aagcaagccctacaggaaaccctgaaatcaagtttggaagtttctgtggtccctgcattt
gagatgtcatgtaggaccatgtttgagcaggttgatgccacatttcagaaaggaatggtt
gagcatacaacagcagctcagcaacaatttgaggcggcacattcaccattggcacttgca
ttacgggatgctataaattcagcatcatcaatgacacaaactttgagcagtgagttgctt
gatggccaaaggaaactattagctcttgccgtcgcaggagcaaattctaaagcaccaaat
ccattgattagtcaactaagtaatggtcctctggctggtctccatgagaagctcgaggta
cctcttgacccaacaaaagagctatctagattgatagccgagcgtaaatatgaggaggct
ttcactgctgccctgcaaaggagtgatgttgctattgtatcatggttgtgctctcaggtt
gatttacctggaattctgtcgatgaatcccctacctttgagccaaggtgtactcctctct
cttctacaacagttggcttgtgatatcagcaaagagacctctcggaaattaacatggatg
agggaggttctatctgctataaatccaactgacccaatgattgtagtgcatgtgcgcccc
atctttgagcaagtttatcaaatattgaatcaccatcgcagccttccaaccacaagcggt
gctgaactttccaacattcgcttgatcatgcatgtcatcaactccatgcttatgagctct
aagtga
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integrated database retrieval system
