Sesamum indicum (sesame): 105175064
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Entry
105175064 CDS
T04135
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X2
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105175064
03015 mRNA surveillance pathway
105175064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105175064
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105175064
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
RRM_5
Nup35_RRM_2
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
105175064
NCBI-ProteinID:
XP_011095687
UniProt:
A0A6I9U4Z9
LinkDB
All DBs
Position
LG12:2004988..2009381
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AA seq
424 aa
AA seq
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MAKPARRRPASPSGSDSGSYSRSRSRSRSISRSRSRSYSGSDSRSSRSRSRSRSFSSSSS
PSRSGSSRRPSPAPPRKSPADGVKRGRSPPPQNKKPSPPPRKASPVPESLVLHVDQLSRN
VNEHHLKEIFGNFGEVVNVRLAIDHVVNLPKGFAYVEFKSRADAEKAQLYMDGAQIDGKV
VRAKFTLPERKKVASPPKAVPSTSRRDAPKSDDAAADADKDGLKRPREVSPRRKPLSPPR
RRSPVGRRGSPRREPDSPPLPRRRADSPARRRADSPYRRDSPLPRRRPPSPPRGRSPSSP
PRRYRSPPRASPRRMRGSPVRRRSPLPPRRRSPRRARSPPRRSPVGRRRSRSPVRRPARS
PSRSPSLRRGRGPPARRGRSSSYSSSPSPRKGPQRISRSRSPRRPMRGRSPSSSSTSSSP
PRKP
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccagccagacgtcgcccggcgtctccgtcggggtcggattctggctcttat
tcccggtctcgttctcgttcacgttcaatttctcgctctcgttcacgttcctactcgggc
tcagactcgcgcagttcgcgctcacgctctcgctcaagatccttctcctcatcttcctct
ccttctcgtagtggcagctctcgcagacctagccctgcccctccacggaaaagtcctgct
gatggagttaagcgaggacgttcaccaccaccacagaataagaaaccttccccacctcca
aggaaagcctctcctgttcctgaatctctcgtgctgcatgttgaccagcttagtaggaat
gtgaacgaacaccacttgaaggagatatttggtaattttggtgaagtggttaatgtacgg
ctggcaattgatcatgtggttaaccttcctaaaggatttgcatatgttgagttcaagagt
agggctgatgctgaaaaagctcagttatatatggacggtgctcaaattgatggcaaagtt
gttcgagccaaattcacattacctgagagaaagaaggttgcgtctcctcctaaggctgtt
ccctccacatcgaggagagatgccccgaaatctgatgatgctgcagcagatgctgacaaa
gatggtctaaagcggcccagagaagtgtcgcctcgccggaagcccctctccccgcctcga
aggagatctcctgtaggacgaagaggatctcccagacgcgagccagattctcctccctta
cctcgtcgacgtgcagattctcctgctcgacgcagagctgattctccttatagacgagac
tccccacttcctaggagaaggcctccctccccacccagaggtcgttcaccctcctcgcct
ccaagacgttaccggtcacctccaagggcatctccaaggaggatgcgtggtagtcctgtt
cgccgacgttctccactcccaccaagacgacgttctccaaggcgtgctcgaagtcctcca
agaaggtctcctgttggccgccgacgcagccgctctccagttaggaggccagctcgctcg
ccatcccgatcgccctctctaagaagaggtcgtggaccacctgctagacgtggtagatca
tcttcttattcttcgtcgcctagcccacggaagggcccacaaaggatctcaaggagccgt
agtcctagaaggcctatgagaggaagaagtcccagcagcagcagcaccagcagttctcct
cctcgtaagccttga
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