Sesamum indicum (sesame): 105176361
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Entry
105176361 CDS
T04135
Name
(RefSeq) THO complex subunit 4D isoform X2
KO
K12881
THO complex subunit 4
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03013
Nucleocytoplasmic transport
sind03015
mRNA surveillance pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105176361
09122 Translation
03013 Nucleocytoplasmic transport
105176361
03015 mRNA surveillance pathway
105176361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105176361
03041 Spliceosome [BR:
sind03041
]
105176361
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105176361
TREX complex
105176361
Spliceosome [BR:
sind03041
]
Complex C
Other components
EJC/TREX
105176361
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105176361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
105176361
NCBI-ProteinID:
XP_011097440
UniProt:
A0A6I9UH87
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All DBs
Position
LG13:complement(3694765..3702216)
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AA seq
275 aa
AA seq
DB search
MASLDMSLDDMIKNRRSNNRGGRGDGRPRRGKGPGMSSRGGRPFGAPRRNPLGVNVRPSA
YTIAKSIRRTKNLPWQNGLFEDSLKAAGLSGLETGTRLYISNLEVGVTNEDIRELFSDIG
ELVRYAVHFDKTGRPSGSAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIVGANAETPVS
ARVNVVGGANGRKRTVVIAPGPGRSRGGFASANRGSAQRGRGGSTNVRGGGRGRGGGRGG
GRGRGGAQWRKKTVEKSADELDKELETYHAEAMQS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atggcttctttggatatgtctttggacgatatgataaagaacaggagaagtaataaccga
ggaggcaggggtgacggcaggccccgacgtggaaaggggccaggaatgtcatccagaggt
ggaagaccatttggagctcctcgtagaaatccacttggagtaaatgttcgaccatcagca
tacacaattgccaagtccatccgcagaaccaagaatttgccctggcagaatggtttgttt
gaagatagtcttaaagcagctggattgtcagggctggaaactggtacacgattgtatatt
tccaacttggaggttggtgtaaccaatgaagatataagggagctcttttctgatattgga
gagttggtgcgatatgcagttcactttgacaaaactgggcgcccaagcggttcggctgaa
gttgtatttgcaagaagaagtgatgcctttcaagcactgaagcggtataacaatgtgcag
ttggatggaaagcctatgaagatagagatcgttggtgccaatgctgagacccctgtctca
gctcgagtgaatgtagtgggaggagcaaatggaagaaagaggacagttgtcattgcgcct
ggacctggtcgttccagaggaggctttgcatcagctaatcgtggttctgcacaaaggggt
cgtggaggttcaaccaatgtacgtggaggcggacgtggccgtggaggtggacgtggtgga
ggtcgtggacgtggtggagctcaatggagaaagaaaactgtggagaaatcagctgatgaa
cttgacaaggagctggagacttatcatgctgaagcaatgcaatcttga
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