Sesamum indicum (sesame): 105176592
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Entry
105176592 CDS
T04135
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105176592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sind03019
]
105176592
Enzymes [BR:
sind01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105176592
Messenger RNA biogenesis [BR:
sind03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105176592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105176592
NCBI-ProteinID:
XP_011097756
UniProt:
A0A6I9USJ1
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Position
LG14:479750..483683
Genome browser
AA seq
725 aa
AA seq
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MKRSYLVRALTRTRNRTSLLTRSLCSSASQPSGADVALKNVTKSNFEPALAELRHHVREA
DFVAVDLEMTGVTSAPWRESFEFDRSDIQYLKIKDSAEKFAVVQFGVCPFRWDPHSRSFV
AHPHNFYIFPRQEIVGDGLSYEFLCQTSSLEFLAKYQFDFNACVYEGISYLSRSQEEEAL
RRLDSLYKDDSSNASSNFRNGVETQLISMADILFAERMKNMVSEWRAGLLREGGGGHEIQ
GNLNGMSQKFQTTFFHMHPALVVNGLTSRQLRLIKLITEKHFQDLAYVYVTGETSSRQPL
IVYTDSTTDRESLMREVKACQRKEAETKIKAAIGFRQVIDLLSSERKLIVGHNCFLDLAH
VYNKFIAPLPSTAEEFVSAFQTYFPHVIDTKVLLNLDDALLRIVGKGGTSLSKAFGLLCR
PIAPSSSSTVLAGKPRVIVEVEVDDQRFPNWNSGAKHEAGYDAFMTGCVFSQACLHLGID
FSSHAAAVDLVHNEKLQKYINHLYLSWVNGDIIDLKTGKGAAESLGSTSVKRHHPKIVFS
NMILLWGLPSKLRGKDIKDCFCQVFGRGSITSIYHLDETAALVQFSKAELVSDFLILKDT
LGRDNDPISVLHPLSRIFESGCVRAASYETYKEICSSPVSELLFTDQAKAVGINWNTRLV
EQAIGSENQDDETCEKERKINAIPICQDQGKTSPGTSVSDTQSSCHFPTDELVDSFYPSE
AQMSK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaagttacctggttcgggccctcacccgaacccgaaataggacctcattgctc
acccgctccttgtgctcctcagcttctcagccttcgggtgccgacgtggcgctgaagaat
gtgacgaagtcgaactttgagccggcgctggccgagctgcggcaccatgtgagagaagca
gatttcgtggcggtcgacttggagatgacgggggtgaccagcgcgccgtggcgtgagtcc
ttcgagtttgatcgatccgacatccagtatttgaagattaaagactccgccgagaaattt
gctgtcgttcagttcggcgtctgtcccttccgatgggacccacatagccgctcctttgtt
gcccatccgcacaacttctatatatttccaaggcaggagattgtaggtgatggcttatct
tatgagttcctgtgccagacaagctcgttggagttcttggcgaaatatcagtttgatttc
aatgcatgtgtttatgaaggaatatcttatttatccagaagccaagaggaggaagcattg
agacgattagactcattatacaaggatgatagctctaatgcatcatctaacttcaggaat
ggtgtggagacacagctgattagtatggcagatattctgtttgctgagagaatgaagaac
atggtcagtgaatggcgggctggactattacgagagggaggtgggggacatgaaattcag
gggaacttgaatggaatgagtcagaaatttcagacaactttcttccacatgcatccagcc
cttgtagtgaatggcttgacttcgcgccagctgagattgattaagctgatcaccgaaaag
cacttccaagatcttgcttatgtctacgtgactggtgaaacttccagccggcaaccgttg
atagtctatacggattccacaacagacagggaatccctgatgagggaggttaaagcttgt
cagaggaaagaagcagaaactaagattaaagctgcaattgggtttcgacaagttattgat
ctgctttcctcggagagaaaattgattgttggtcataattgtttccttgatcttgcacat
gtttacaacaagttcattgcccctcttccctcgactgctgaagaattcgtctcagctttt
caaacatacttcccacatgtaattgatactaaggtgctgctaaacttagatgatgcatta
ctgcgtatcgttgggaaaggcggcacatcactttccaaagcatttggcttactctgtcga
cctattgctccaagtagctcaagcactgttttggcaggtaaaccacgtgttatagtggaa
gttgaagtggatgatcagaggtttccaaattggaactctggagcgaagcatgaagctgga
tacgatgcttttatgacagggtgcgtcttttctcaggcatgcctccatttaggaattgat
tttagctcgcatgcagcagcggtagatttggtacacaatgagaagctccaaaagtatatc
aatcatttatatctcagctgggtgaatggagacatcattgatctgaaaacaggaaagggt
gcagctgaatcgttgggttctactagtgtcaagcgccatcatccaaagattgtgttttca
aatatgattttattatggggactgccgtcaaagcttagaggaaaagatattaaagattgt
ttttgtcaagtttttgggagaggctctattacttcaatctaccatttggatgaaactgca
gcactcgttcaattcagcaaagcagaactggtgtccgactttcttatattgaaggatacc
ttaggacgagataatgacccaatctcagttttgcatcctctatcaagaatcttcgaatct
ggatgtgtgcgtgctgccagctatgagacatacaaagagatctgcagttcgccggtatca
gaactgctattcacggatcaggctaaggcagttggaatcaactggaacaccagactggta
gaacaagctattgggtctgaaaaccaggatgatgagacgtgtgagaaagaacgcaaaata
aatgctattcccatttgtcaagaccaaggaaagacaagccctggaactagtgtgtctgat
actcagtcaagctgccattttccaactgatgaacttgtagattctttttatccctctgaa
gctcagatgagcaaatag
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