Sesamum indicum (sesame): 105178435
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Entry
105178435 CDS
T04135
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105178435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
105178435
03041 Spliceosome [BR:
sind03041
]
105178435
03036 Chromosome and associated proteins [BR:
sind03036
]
105178435
Transcription machinery [BR:
sind03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105178435
Spliceosome [BR:
sind03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105178435
Complex B
105178435
Complex C
U2 SnRNP specific factors
105178435
Chromosome and associated proteins [BR:
sind03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105178435
TFTC complex
105178435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
105178435
NCBI-ProteinID:
XP_011100199
UniProt:
A0A6I9UP28
LinkDB
All DBs
Position
LG2:complement(3158706..3164776)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQATGILCAINGSFSGGKSQEIVVARGKVLDLLRPDENGKLQSLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNTFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVYSICGVDCGFDNPI
FAAIELDYSEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRREDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLEHENDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GGDPDVEASSATLMETEEGFQPVFFQPRKLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
VFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDIACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSVIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGESFNETAVPLRYTP
RKFVLQPKRKLLVIIESDQGAFTAEEREAAKKESFEAAGVGENGNTEQMENGEDEENSDP
LSDEQYGYPKAESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSMCTVNFHDKEYGTLLA
VGTAKGLQFWPKRSFEAGYIHIYRFREEGKVLELLHKTQVEGVPLALSQFQGRLLAGIGS
VLRLYDLGKRRLLRKCENKLFPNTITSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVTCLQKASLIPGGGECIIYGTVMGSLGALLPFTSRDDVDFFSHLE
MHMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctgacccttcagcaagccaccggcatcctttgcgccatcaatggc
agcttctccggcggaaagtctcaagagattgtggtggcgcggggcaaggtcctcgacctc
cttcgccccgacgagaatggtaagctccagtccctcctctctgttgaaatctttggcgct
attcgttctttagctcaatttcggcttacgggtgcgcaaaaggattacattgttgtgggt
tcggattccggacggattgtaatccttgaatacaataaagaaaagaatacgtttgataag
attcatcaggaaacgtttgggaaatctggatgtcgtaggatagtacccgggcagtacttg
gctattgaccctaagggtagagctgtgatgattggtgcttgcgagaagcagaagcttgtt
tatgttttgaatagggatactgcagctaggttaactatttcgtcgcctctagaggcacat
aagagccacacactcgtctattcgatttgcggggtggattgtgggtttgataacccgata
tttgcggccatagagttggattattctgaggctgaccaggatcccactggtcaggctgct
aatgaggcacagaagcatttgaccttctatgagttggatctagggcttaaccacgtgtcg
aggaaatggtctgaacaggttgacaatggtgctaatttgcttgttactgtgcctggtggt
ggggacggacctagtggtgtgcttgtgtgcgcagagaattttgttatatataagaatcag
ggacatccagatgtcagggcggttattccgagacgcgaggacttgccggcagagcgtggg
gtcttgattgtctcagctgccatgcataagcagaaatccatgtttttcttcctcttgcag
accgagtacggggatattttcaaagtgacactggaacatgagaatgatagagtgaaagag
ttgaagataaagtattttgatactattcccgtgacgtcatccttgtgtgttttgaagtct
ggttttctgtttgctgcatcggagtttggcaaccatgccttgtatcaatttcaggctatt
ggaggtgatccagatgtggaggcctcgtccgctacgctaatggaaacagaggaaggtttt
caaccagtgtttttccaaccgaggaagctgaagaatctagtgaggattgatcaagttgag
agcttaatgcctattatggatatgaaagttataaatctctttgaggaagaaacccctcag
gtattttcactttgtgggcggggacctcgttcatctctgcggatattgcgaccgggtttg
gctattagtgaaatggcagtttcacagttacctggcgttccgagtgctgtctggactgtg
aaaaagaatgtaaatgatgaatttgatgcttatattgttgtgtcttttgcaaatgccact
ctcgtactttccattggtgagactgttgaagaagttagtgatagtggatttcttgacaca
acaccttcgcttgctgtttctttgattggggatgactctctgatgcaagtccatccaagc
ggtattaggcatatcagagaagatggccgcatcaatgagtggagaaccccaggaaagagg
accattgttaaggttgggtccaatagacttcaggttgtcattgctctgagtgggggggag
cttatatattttgaagttgatatgactgggcagctgatggaggttgagaagcatgaaatg
tctggagatattgcttgtttggatattgcccctgtcccagaaggaagacagaggtcacgc
ttcctagctgttggatcttatgacaataccatccgcatcttatctttggatcccgatgac
tgtatgcaggttctgagtctgcaaagtgtttcatctcccccggagtctctcctctttctt
gaagttcaggcttctataggaggggaggatggagcagaccatccagctagcctctttctg
aatgctggtctgcaaaatggggttctattcaggacagtggtggatatggtcaccgggcag
ctttcagatgctcgctctcggttcttaggactcagagcccctaaactcttttctgtcatt
gtgagaggacggcgagccatgctttgcttgtccagtagaccttggcttggctacatacac
caagggcacttcctcctgacaccgttgtcatatgagactcttgaatatgcagcttctttt
tcctcagatcagtgtgcagaaggtgttgttgctgttgctggggacgcattaagagttttc
actattgagagactgggagaatcatttaatgaaactgctgtacctttgaggtataccccg
agaaagtttgtacttcagcccaagaggaagctgttggttataattgaaagtgatcaggga
gcattcactgcagaagagcgtgaagctgcaaaaaaggagtcatttgaggctgctggagtg
ggagaaaatggaaacacggagcagatggagaatggtgaggatgaggaaaacagtgatccc
ctttctgatgagcaatatggttatcctaaggcagagtctggaaggtgggtgtcttgcatc
agagttcttgacccaaggacaactcagacgacctgtttactggagcttcaggataatgaa
gctgcattcagtatgtgcactgtaaacttccatgataaggagtatggaactcttttagct
gtgggtacagcgaagggcctacagttttggcccaagagatcctttgaggctggatatatt
catatatataggttcagggaagaggggaaggtccttgaacttttgcacaaaacacaagtg
gaaggtgtccccctcgctttgtcccagtttcaaggtagattgctggctggtataggatct
gtgcttagattgtatgatttgggaaaaaggagactgcttagaaaatgtgagaataagctg
ttccctaatacaatcacttctatccacacctatcgagatcggatttatgttggtgacatg
caagagtcattccactattgcaagtatagacgagatgaaaaccagctgtacatatttgct
gatgacactgttccgagatggcttactgcagcacaacatatagattttgacaccatggca
ggtgcagacaaatttggaaatgtttactttgtgcgattgccacaggatgtgtcagatgag
attgaagaagatccaacaggtggtaagataaagtgggagcaggggaagctgaatggtgcc
cccaacaaagtagaggaaatagtccaattccatgttggcgatgtggtcacctgcttgcag
aaggcatctctgattccaggtggtggagaatgcattatatatgggactgtaatggggagt
ttgggagcattgcttccattcacatcacgtgatgatgttgatttcttctctcatttggag
atgcacatgcgacaggaacacccaccattatgtggcagagatcacatggcttacagatcc
gcctacttcccggtgaaggatgtgatagatggagatctgtgtgaacagttccctaccttg
ccaatggatatgcaacgtaaaattgcagatgagcttgatagaacaccagctgagattttg
aaaaagctggaagaaatcagaaacaaaatcatttga
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integrated database retrieval system
