Sesamum indicum (sesame): 11452387
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Entry
11452387 CDS
T04135
Symbol
rpoC2, SIC0178
Name
(RefSeq) RNA polymerase beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sind
Sesamum indicum (sesame)
Pathway
sind03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sind00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
11452387 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sind03021
]
11452387 (rpoC2)
03400 DNA repair and recombination proteins [BR:
sind03400
]
11452387 (rpoC2)
Enzymes [BR:
sind01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
11452387 (rpoC2)
Transcription machinery [BR:
sind03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
11452387 (rpoC2)
DNA repair and recombination proteins [BR:
sind03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
11452387 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
11452387
NCBI-ProteinID:
YP_004935656
UniProt:
G9IB52
LinkDB
All DBs
Position
Pltd:complement(16871..21043)
Genome browser
AA seq
1390 aa
AA seq
DB search
MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
LGIDDLLTIPSKRWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
EYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGMMP
ERIFIQTLIGRVLADDIYMGTRCIATRNQDIGIGLVNRFITFRAQPIAIRTPFTCRSASW
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS
NGKIKFNEDLVHPTRTRHGHPAFLCSINLYVTIESEDIRHNVNIPPQSFLLVQNDQYVES
EQVIAEIRAGTSTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWI
LLGGPCRSSPVSLSLHKDQDQMSAQSRSVKRRSTSNLSGTNDQSRQKFFTSDFSGKKEDR
IPDYLDLSRIIYTGLCNLIDPTILYQNSDLFSKRRRNRFIIPLQSIQERENELMPPSGIS
IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTLEMHSIVKKEDLIEYRGGKEFRPKY
QMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQITLNIRSRVAGLVRVERKKKRIEL
KIFSGDIHFPGETDKISRHSGVLIPPGTGKQNCKESKKWKNWIYVQRITPSKKKYFVLVR
PVVTYEITDGITLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGISDTNIQLVRTCLV
LNWDPDKKSSSSQEARASFVEIRANGLIRHFLRIDLVKSTISYIGKRNDPSGSGLFSDNG
SDCTNTNPFSSSYCKARIQQPLNQNQRTIHTLLNRNTGFQSLIILSSSNCFRMGPFNGVK
YHNVIKESIKITKDPLIPIKNSLGPLGTAFLIANVYSFYHLITHNQILVNNYLQLDNLKQ
TFQVINLSTYYLMDENAKIYNPDPCSNIIFNLNWYFLHPNYCQETSTLMSLGQFICENIC
IAKNAPHLKSGQVILVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLITFIYEKSR
SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITRILGMPWAFLIGAELTIVQSR
ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMG
RALEEAVCYRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVL
GGMIPVGTGLKGLVPPSKQHNKGPLETKKNNLFEGETRDILFHHRKLFDSFLSKNFHDRP
EQSFIGFNDS
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacttatggcagaacgggccaatctggtatttcacaataaagtgatagacgga
actgccatgaaacgacttataagtagattaatagatcacttcggaatggcatatacatca
cacatcctggatcaagtaaagactctgggttttcaacaagctactgctacatccatttca
ttaggaattgatgatcttttaacaataccctcgaagagatggctagttcaagatgctgaa
caacaaagtttgattttggaaaaacaccatcattatgggaatgtacacgcggtagaaaaa
ttacgccaatccattgaaatatggtatgccacaagtgaatatttgcgacaagaaatgaat
cctaattttaggatgactgacccctttaatccagttcatataatgtctttttcgggagct
agaggaaatgcatctcaggtacatcaattagtaggtatgagaggattaatgtcggaccct
caaggacaaatgattgatttacccattcaaagcaatttacgcgaagggctttcgttaaca
gaatatatcatttcttgctacggagcccgtaaaggggttgtggatactgctgtacgaaca
tcagatgctggatatctcacgcgcagacttgttgaagtagttcaacacattgttgtacgt
cgaacagattgtggcaccgtccgcggtatttctgtgagtcctcagaatgggatgatgcca
gaaaggatttttatccaaacattaattggtcgtgtattagccgatgatatatatatgggc
acacggtgtattgccactagaaatcaagacattgggattggacttgtaaatcgattcata
acctttcgagcacaaccaatagctattcgaactccttttacttgtcggagtgcatcttgg
atctgtcgattatgttatggccggagtcctactcatggcgacctggttgaattgggagaa
gctgtaggtattattgcaggccaatcgattggagaaccgggtactcaattaacattaaga
acttttcataccggcggagtattcacggggggtactgcagaacatgtgcgagccccttct
aatggaaaaataaaattcaatgaggatttggttcatccgacacgtacacgacatgggcat
cccgcgtttctatgttctataaacttgtacgtaactattgagagtgaagatattcgacat
aatgtaaatattccaccccaaagttttcttttagttcaaaatgatcaatatgtagaatcc
gaacaagtgattgctgagattcgtgcaggaacatccactttgaattttaaagagaaggtt
cgaaaacatatttattctgactcagacggagaaatgcactggagcaccgatgtgtatcat
gcacccgaatttacatacgggaatgttcatctattaccaaaaacaagtcatttatggata
ttattaggggggccgtgcagatccagtccagtctcactttcgctccacaaggatcaagat
caaatgagtgcgcagtctcgttctgtcaagagaagatctacttctaacctctcaggaacg
aatgatcagtcgagacaaaaattctttacttcggatttttcgggtaaaaaagaagatagg
attcctgattatttagaccttagtcgaattatatatactggtctttgtaatctcatagat
ccgaccattctctaccagaattctgatttattctcaaagaggcgaagaaatagattcatc
attccactccaatcgattcaagaacgcgagaacgaactaatgcccccttcaggtatctcg
attgaaattcccatcaatggcattttccgtagaaatagtattcttgcttatttcgacgat
cctcgatacagaagaaagagttcgggcattactaaatatgggactctagaaatgcattca
atcgtcaaaaaagaggatttgattgagtatcgaggaggcaaggaatttaggccaaaatac
caaatgaaagtggatcggttttttttcattcccgaggaagtgcatatcttacccggatct
tcttctataatggtacggaacaatagtatcattggggtagatacacaaattactttaaat
ataagaagccgagtagccgggttggtccgagtggagagaaaaaaaaaaagaattgaactt
aaaatcttttctggagatatccattttcctggagagacagataagatatcccgacatagc
ggcgttttgataccaccaggaacaggaaaacaaaattgcaaggaatccaaaaaatggaaa
aattggatctatgttcaacggatcacacctagcaagaaaaagtattttgttttggttcgg
cctgtcgtcacatatgaaataacggacggtataactttagcaacgcttttccccccggat
ctgttgcaggaaagggataatgtgcaacttcgagttgtcaattatatcctttatggaaat
ggtaaaccaattcgaggaatttctgatactaatattcaattagttcggacttgtttagta
ttgaattgggatccagacaaaaaaagttcttctagtcaagaagcccgtgcttcctttgtt
gaaataagggcaaatggtttgattcgacatttcctaagaatcgacttggtgaaatccact
atttcatatatcggaaaaaggaatgatccatcgggctcaggattgttctctgataatgga
tcagattgcaccaataccaatccgttttcttccagttattgcaaggcaagaattcaacaa
ccccttaatcaaaatcaaagaactattcatacgttgttgaatagaaatacgggattccaa
tcgttgataattttgtcatcatccaattgttttcgaatgggtccattcaacggtgtaaaa
tatcacaatgtgataaaagaatcaattaaaattacaaaagatcctctaattccaattaag
aattcgctggggcctttaggaacagcctttctaattgcgaatgtttattcattttaccat
ttaataactcataatcagatcttggtaaataactatttgcaacttgacaatttaaaacag
acttttcaagtaattaatctttctacatattatttaatggatgaaaatgcgaaaatttat
aaccccgatccatgcagtaacattattttcaatttgaattggtattttctccaccccaat
tattgtcaagaaacatctacattaatgagtcttgggcagtttatttgtgaaaatatatgt
atagccaaaaacgcaccacacctaaaatcgggtcaagttatacttgttcaagttgactct
gtagtaatacgatcagctaagccttatttggccactccaggagcaactgttcatggccat
tatggggaaatcctgtacgaaggagatactttaattacatttatatatgaaaaatcgaga
tctggtgatataacccaggggcttccaaaagtggaacaggtgttagaagtgcgttcgatt
gattcaatatcgatgaatctagaaaagagggttgagggttggaacgaacgtataacaaga
attcttggaatgccgtgggcattcttgattggtgctgagctaactatagtgcaaagtcgt
atctctttggttaataagatccaaaaggtttatcgatcccagggggtgcagattcataat
aggcatatagaaattattgtacgtcaaataacatcaaaggtcttggtttcagaagatgga
atgtctaatgttttttcacccggagaactaattggattgttgcgagcagaacgaatgggg
cgcgcgctggaagaagcggtttgttaccgagcgctcttattgggaataacaagagcatct
ctcaatactcaaagtttcatatctgaagcgagttttcaagaaactgctcgagttttagca
aaagcagctctccggggtcgagtcgattggttgaaaggcctgaaagagaacgttgttttg
gggggtatgatacccgttggtaccggattgaaaggattagtgcccccttcaaaacaacat
aacaagggccctttggaaacaaaaaaaaacaatctattcgagggggaaacgagagatatt
ttgtttcaccacagaaaattatttgattcttttctttcaaagaatttccatgatagacca
gaacaatcatttataggatttaatgattcctaa
DBGET
integrated database retrieval system
