Streptomyces inhibens: KI385_18930
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Entry
KI385_18930 CDS
T08140
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sine
Streptomyces inhibens
Pathway
sine03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sine00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KI385_18930 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sine03400
]
KI385_18930 (mfd)
Enzymes [BR:
sine01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KI385_18930 (mfd)
DNA repair and recombination proteins [BR:
sine03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KI385_18930 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UKY50686
LinkDB
All DBs
Position
complement(4151934..4155515)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAAADGHRPHVDVVGPPAARPFVVAALARDAKRPVLAVTA
TGREAEDLAAALRTLMPAGEENSVVEFPSWETLPHERLSPRSDTVGRRLAVLRRLTHPRT
DDPSAGPVSVVVAPIRSVLQPQVKGLGELEPVSLRTGQSADLEEIVDGLAAAAYARVELV
EKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCR
ELLLTDQVRERAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGS
MAVVCDPERVRTRAADLVATSQEFLQASWAASAGGGAAPIDVGAASLWGIADVRERAREL
GMLWWSVSQFTSGDLADGAAGQEPAGDDAVDGDTLKLGMHAPDSYRGDTQRALADTKQWL
ADGWRTVYVTEAHGPAARTVEVLGGEGVPARLDGDLAAISPSLVHVACGSIDNGFIDPSL
RLAVLTETDLSGQKAAGKDAARMPARRRKTIDPLTLQAGDFIVHEQHGVGRYIEMVQRTV
QGATREYLLVEYAPAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARA
KKAVKEIAADLIKLYSARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDME
KSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHHGTFTERYGQFP
VNVKALSRFQTDTEAKAVLEGLREGSVDLVIGTHRLFSAETKFKDLGLVIVDEEQRFGVE
HKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQ
IGAAIRRELLREGQVFYIHNRVESIDRAAARLREIVPEARIQTAHGQMGESALEQVVVDF
WEKKFDVLVSTTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYP
PEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVADYRASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEE
DIAAVREELTDRYGKLPEPVENLLLVAGLRMLARACGVSDITLQGSNIRFGPVELRESQE
LRLKRLYPRTVLKPATRQILVPRPTTGKIGGKPLVGRELLGWVGEFLTTVLGS
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgactggtctgctcgacgccgtcgtacgggacccggcgctcgccgaagcggta
caggccgcggccgacggacaccggccgcatgtggacgtggtggggccgccggccgcccgc
ccgttcgtggtcgccgcactggcccgcgacgccaagcgcccggtgctggccgtgaccgcc
accggccgggaggccgaggacctggccgccgcgctgcgtacgctgatgccggccggcgag
gagaactccgtcgtggagttcccgtcctgggagacgctgccgcacgagcggctctcaccg
cgctcggacaccgtcggccggcgcctcgcggtgctccgccggctgacccatccgcggacg
gacgacccgagcgccggcccggtctccgtcgtcgtcgcaccgatccgttccgtgctccag
ccgcaggtcaaggggctgggcgagctggagccggtcagtctgcgtacggggcagagcgcc
gatctcgaagagatcgtcgacggtctggcggcggccgcctacgcacgcgtcgaactcgtc
gagaagcgcggtgagttcgcggtccgtggcggcatcctggacgtcttcccgccgaccgag
gagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaag
gtcgccgaccagcggtccctggaggtcgccgagcacggcctgtgggcgccgccgtgccgt
gagctgctgctgaccgaccaggtgcgcgagcgggccgcggcgctcgccgagcagcacccg
gagctgggcgaactgctcggcaagatcgccgagggcatcgccgtggagggcatggagtcc
ctggctcccgtcctggtcgacgacatggagctgctgctggacgtgctgcccaagggctcc
atggccgtggtgtgcgacccggagcgggtgcgtacccgggccgccgacctggtggccacc
agccaggagttcctccaggcctcctgggcggccagcgccggcggcggggcggcgccgatc
gatgtgggcgcggcctccctgtggggcatcgcggacgtccgcgagcgggcccgtgagctg
gggatgctgtggtggtcggtcagccagttcacctccggtgacctcgcggacggcgccgcc
ggccaggagccggccggggacgatgccgtggacggcgacaccctcaagctggggatgcac
gcccccgacagctaccgcggtgacacccagcgggcgctggccgacaccaagcagtggctc
gcggacggctggcgcacggtctatgtcaccgaggcgcacggcccggcggcccgcacggtc
gaggtcctcggcggcgagggcgtccccgcgcgcctggacggcgacctggccgcgatctcc
ccgtccctggtccatgtcgcctgcggctccatcgacaacggcttcatcgacccgtcgctc
aggctcgccgtcctgaccgagaccgacctctcgggccagaaggcggccggcaaggacgcg
gcccggatgccggcccgccgccgcaagaccatcgacccgctcaccctccaggccggcgac
ttcatcgtccacgagcagcacggtgtgggccgctacatcgagatggtgcagcgcacggtc
cagggcgccacccgcgagtacctcctcgtcgagtacgcgccggccaagcgcggccagccc
ggcgaccgcctctacatccccaccgaccagctcgaacaggtcaccaagtacgtgggcggc
gaggccccgaccctgcaccggctcggcggcgccgactggaccaagaccaaggcgcgcgcg
aagaaggccgtcaaggagatcgccgccgacctgatcaagctgtactccgcccggatggcg
gcgcccggccacaccttcggcccggacaccccctggcagcgcgagctggaggacgccttc
ccgtacgcggagacgcccgaccagctcaccaccatcgccgaggtcaaggaggacatggag
aagtcggtccccatggaccgcctcatctgtggtgacgtcggctacggcaagaccgagatc
gcggtccgcgccgccttcaaggctgtccaggacggcaagcaggtcgccgtcctggtcccc
accaccctcctcgtccagcagcaccacggcacgttcaccgagcggtacggccagttcccg
gtcaacgtcaaggcgctctcccgcttccagaccgacaccgaggccaaggccgtcctcgaa
gggctgcgggagggctccgtcgacctcgtcatcggcacccaccgcctcttctccgccgag
accaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcggttcggcgtcgag
cacaaggagcagttgaagaagctccgcgccaatgtcgacgtgctcacgatgtccgccacc
cccatcccgcggaccctggagatggcggtgaccggcatccgcgagatgtccacgatcacc
accccgcccgaggagcggcaccccgtcctcaccttcgtcggcccctacgagcagaagcag
atcggcgcggccatccgccgtgaactcctgcgcgagggccaggtcttctacatccacaac
cgtgtcgaatcgatcgaccgcgccgccgcccggctccgcgagatcgtgcccgaggcccgc
atccagaccgcccacggtcagatgggcgagtcggcgctcgaacaggttgtcgtcgacttc
tgggagaagaagttcgacgtgctggtctccaccacgatcgtcgagtccggcatcgacatc
tccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctctcccagctccac
cagctgcgcggccgggtgggccgtggccgcgagcgcggctacgcctacttcctctacccg
ccggagaagccgctcaccgagaccgcccatgagcggctggcgaccatcgcccagcacacc
gagatgggcgcgggcatgtatgtcgccatgaaggacctggagatccgcggcgcgggcaac
ctcctgggcggcgagcagtccggccatatcgccggtgtcggcttcgacctctacgtacgg
atggtgggcgaggcggtcgccgactaccgcgcctccctcgaaggcggcgtggaggaggag
cccccgctggaggtcaagatcgaactcccggtggacgcgcatgtcccgcacgactacgcg
ccgggcgagcggctgcgcctccaggcgtaccgcgccatcgcctccgccaactcggaggag
gacatcgccgcggtccgcgaggagctcaccgaccgctacggcaagctccccgagcccgtc
gagaacctcctgctggtcgcgggcctgcggatgctggcccgcgcctgtggcgtctcggac
atcaccctgcagggcagcaacatccgcttcggccccgtggaactgcgcgagtcccaggag
ctgcgcctcaagcgcctgtatccgcgtacggtcctcaagccggccacccgccagatcctg
gtgccccgtccgacgacgggcaagatcggcggcaagccgctggtcgggcgtgagctgttg
ggttgggtgggggagttcctgactaccgttttgggctcgtag
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