Streptomyces inhibens: KI385_21250
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Entry
KI385_21250 CDS
T08140
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sine
Streptomyces inhibens
Brite
KEGG Orthology (KO) [BR:
sine00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sine03016
]
KI385_21250
Enzymes [BR:
sine01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KI385_21250
Transfer RNA biogenesis [BR:
sine03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KI385_21250
Prokaryotic type
tRNA splicing ligases
KI385_21250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UKY51095
LinkDB
All DBs
Position
complement(4634322..4635515)
Genome browser
AA seq
397 aa
AA seq
DB search
MSYVEVPGAQVPIRMWTDPATVEGVAMEQLRNVATLPWIQGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDAPVDPG
QLHGFPTAGWGDFWARFDGVAEAVKFRQERATKQMGSLGSGNHFIEFCLDDNGAVWLMLH
SGSRNIGKELAEFHMGQAQKLPHNQGLVDRDLAVFIADTPPMAAYRNDLFWAQEYAKHNR
DVMMALFQDVIRKEFKKARPTFEPVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNAASFNSASHGAGRKMSRNAAKKRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIERVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaagtgcctggtgcgcaggtaccgatccggatgtggacggacccggcc
acggtggagggcgtcgcgatggagcagctgcgcaacgtcgccaccctgccgtggatccag
ggcctggccgtgatgcccgatgtgcattacggcaagggggccaccgtcggctcggtgatc
gcgatgcgcggtgcggtctgcccggccgcggtcggtgtcgacatcggctgcggaatgagc
gcggtgaagacctcgctcaccgccaacgacctgcccggtgatctttcccggctccgctcg
aagatcgagcaggcgatcccggtgggccgggggatgcacgacgccccggtcgaccccgga
cagctgcacggcttcccgacggcggggtggggggacttctgggcgcggttcgacggggtc
gccgaagccgtcaaattccgtcaggaacgtgccacgaagcagatgggttcgctgggatcc
ggcaaccacttcatcgagttctgtctcgatgacaacggcgcggtgtggctgatgctgcac
tccggctcccggaacatcggcaaggagctggccgagttccacatgggacaggcccagaag
ctgccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
ccgatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgccaagcacaaccgg
gacgtgatgatggcgctcttccaggacgtcatccgcaaggagttcaagaaggccaggccg
acgttcgagccggtgatctcctgccaccacaactatgtggcggaggagcgctacgacggc
atggacctgctggtgacccgtaagggcgcgatccgggccggcagcggcgagtacggcatc
attccgggctcgatgggcaccggctcgtacatcgtcaagggcctcggaaacgccgcctcg
ttcaactccgcctctcacggagccggccgcaagatgagccggaacgccgcgaagaagcgg
ttctccaccaaggacctggaggagcagacgcggggtgtggagtgccgtaaggactccggt
gtggtggacgagatcccgggcgcctacaagccgatcgagagggtcatcgatcagcagcgg
gacctggtcgaggtcgtcgccaagctcaagcaggtcgtgtgtgtgaagggctga
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