Streptomyces inhibens: KI385_38985
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Entry
KI385_38985 CDS
T08140
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sine
Streptomyces inhibens
Pathway
sine03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sine00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KI385_38985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sine03400
]
KI385_38985 (ligD)
Enzymes [BR:
sine01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KI385_38985 (ligD)
DNA repair and recombination proteins [BR:
sine03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KI385_38985 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
UKY54209
LinkDB
All DBs
Position
8689066..8690013
Genome browser
AA seq
315 aa
AA seq
DB search
MSPITVVEGRRLSLTNLDKVLYPETGTTKGEVLHYWTTTAGTLLAHLHDRPLSFLRYPDG
PDGQLFFTKNVPPGTPSWVKTCEVPHSTSGPTRQVLLQDLPSLVWAANLVVELHTPQWTQ
HAPGLADRLVLDLDPGAPATVVECCAAAQWLHDRLAADGLGVHAKTSGSKGLHLIVPIEP
TPSERTTAYAKTLAVEAAAALPDLVVHKMTKALRPGKVFIDFSQNAAAKTTAVAYTLRAR
ATPTVSTPVTWDEIADCTDPEQLTFLFSDIAPRCARHGDLLAPLLDPERARPLPGAASSG
APTAPDRPGSARGST
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatcaccgtcgtggaggggcggcgcctctcgctgaccaacctggacaaggtc
ctctatcccgagaccggcaccaccaagggtgaggtgctgcattactggaccaccaccgca
ggcacgctgctcgcgcacctccacgaccggccgctgtccttcctgcgctaccccgacggg
ccggacggccagctcttcttcaccaagaacgtgccgcccggcacgccctcctgggtgaag
acctgcgaggtcccccattcgacgtcggggcccacccggcaggtcctgctacaggacctg
ccctcgctggtctgggccgcgaacctggtcgtcgagctgcacaccccgcagtggacgcag
cacgcgccggggctcgccgaccgcctcgtcctcgacctggaccccggcgccccggccacc
gtcgtggagtgctgcgccgcggcacagtggctgcacgaccggctggcggcggacggcctg
ggcgttcacgccaagaccagcggctccaagggcctgcacctcatcgtgcccatcgagccc
accccctccgagcggaccaccgcctacgccaagaccctcgccgtcgaggccgcggcggcc
ctcccggacctcgtcgtgcacaagatgaccaaggcactgcgccccggcaaggtcttcatc
gacttctcccagaacgccgccgccaagaccaccgccgtcgcctacacactgcgcgcccgc
gccacccccaccgtctccaccccggtcacctgggacgagatcgccgactgcaccgacccg
gagcaactcaccttcctcttcagcgatatcgcccctcgctgcgcccgtcacggtgacctg
ctcgccccgctgctcgacccggaacgcgcccgcccgctgcccggcgccgcttcttccggt
gcgcccacggcgcccgatcggcccggttccgcccggggttcgacatag
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