Singulisphaera sp. Ch08: V5E97_14600
Help
Entry
V5E97_14600 CDS
T11449
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sing Singulisphaera sp. Ch08
Pathway
sing03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sing00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V5E97_14600 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sing03021
]
V5E97_14600 (rho)
03019 Messenger RNA biogenesis [BR:
sing03019
]
V5E97_14600 (rho)
Transcription machinery [BR:
sing03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V5E97_14600 (rho)
Messenger RNA biogenesis [BR:
sing03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V5E97_14600 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
S1CSD-TOTE-2
AAA_22
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
XBH07221
UniProt:
A0AAU7CPP6
LinkDB
All DBs
Position
complement(3816934..3818823)
Genome browser
AA seq
629 aa
AA seq
DB search
MANETRPRRESSSTSRIRKAAPLPPGGQPPASAAANENNSTPPAPPVTKSETPEITGPGS
DYRDRPDRDREPYPQERPADREPIRFIRPDREREPIRDRTERGEAGLPVRERLRDRSERE
ATGISRVREHETNVPSRDRSEREIPPTPRDRDRDRDRDYSPPSRVEREPIAAIAEALVNP
QAPGFGSEDDEDVFGDVAIHDRYEDIKRGEIHLTELQKMTMPQLIRTAKAEGVVEYTGLK
KQDLIFKILKERVKQNGLMFGEGTLEVLPDGFGFLRSPDYNYLPCPDDIYVSPSQIRRFG
LKTGAIVAGQIRPPKENERYFALLRVEAINYEDPDKLSEKVGFDDLTPLHPLGRIQLETG
SDEINMRVVDMVTPIGKGQRGLIVAPPRTGKTMLLQKIANSILTNHPDAYVMVLLIDERP
EEVTDMERSVKGPTAEVISSTFDEPASRHIQVAEMVIEKAKRMVEYGRDVVILLDSITRL
ARAYNTEAPHSGKILTGGIDASALQKPKRFFGAARKIEEAGSLTILATALVDTGSRMDDV
IFEEFKGTGNMELHLDRRLVDKRVWPAIDVNRSGTRREELLMDPEELRRVWILRRVLNDM
NPVEAMELLTGRMRKAKTNAEFLMSMNLS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgagactcgcccccgccgggagtcctccagcacgtcccgcattcgtaaggcc
gctccccttcctcccgggggccagccccccgcttcggcggccgccaatgagaacaactcg
acaccccctgctccccccgtcaccaaatccgagacgcccgaaattacgggcccgggtagt
gactatcgcgatcggcccgaccgcgaccgcgagccttatccgcaggaacgacccgccgac
cgcgagccaatccgcttcatccggcccgaccgcgagcgcgagccgattcgcgatcggacg
gaacgcggcgaagcggggctgccggtccgtgagcggctccgcgaccgaagtgaacgcgaa
gcgaccgggatttcacgcgttcgggagcatgaaaccaacgtcccgagtcgcgatcgcagc
gaacgagagattcctccgacaccccgggaccgagaccgcgatcgggaccgagactacagt
ccgccgagtcgggtcgagcgtgagccgattgcagcgatcgccgaggcgctggtcaacccg
caggcccccggctttggctccgaagacgacgaagatgtcttcggcgacgtcgcgattcac
gatcgctatgaagacatcaagcgcggtgagatccacctcaccgagctccagaagatgacg
atgccccagttaatccggaccgccaaggccgaaggggtggtcgagtataccggtctgaag
aagcaggatctgatcttcaagatcctcaaagagcgggtcaagcagaacggcctgatgttc
ggcgagggaacgctggaagttctccccgacggcttcggtttcctgcggagcccggactac
aactacctcccctgccccgacgacatctacgtgtcgccgagccagattcgccgcttcgga
ctcaagacaggcgcgatcgtcgccggccagattcgaccgcccaaagagaacgagcgttac
ttcgctctcctccgggttgaggcgattaactacgaagatcccgacaagctcagcgagaag
gtgggcttcgacgacctcacgccgctccacccgctcgggcgaatccagctcgagaccggc
agcgatgagatcaacatgcgggtcgtcgacatggtcactccgattggcaaaggccagcgc
ggactgatcgtggctccgccgcgaaccggcaagacgatgctgcttcagaagatcgccaac
agcatcctgaccaatcaccccgacgcctacgtgatggtcctgctgattgacgaacggcct
gaagaagtgaccgacatggagcgctcggtcaaggggccgaccgccgaagtcatcagctcg
accttcgatgagcccgcttcgcggcacattcaggtggccgaaatggtcatcgagaaggcc
aagcgaatggtcgaatacggccgcgatgtggtgatcttgctcgactcgatcacccggctc
gcccgtgcttacaacaccgaggccccgcactcgggcaagatcctgaccggcggtatcgac
gcctccgcgcttcagaagcccaagcgattcttcggggccgcccgcaagatcgaggaggcc
ggcagcctcacgatcctggcgaccgccctggtcgataccggaagccggatggacgacgtc
atcttcgaggagttcaagggcaccggtaacatggagctccacctcgaccgtcgtctggtc
gataagcgggtctggccggcaatcgacgtcaatcgctcgggcacgcgtcgcgaagagctc
ttgatggatcccgaagagctccgtcgggtctggatcctccgccgcgttctgaacgacatg
aacccggtcgaggcgatggaactgctgacgggccggatgcgcaaggccaaaaccaacgcc
gagttcctgatgagcatgaacctgtcgtaa
DBGET
integrated database retrieval system
