Singulisphaera photorubra: V5E97_23505
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Entry
V5E97_23505 CDS
T11449
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
sing Singulisphaera photorubra
Pathway
sing02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sing00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V5E97_23505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sing03021
]
V5E97_23505
Transcription machinery [BR:
sing03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V5E97_23505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ECF
Sigma70_r4_2
HTH_23
GerE
Sigma70_r4
HTH_Tnp_ISL3
HTH_11
DUF3489
Sigma70_r2
HTH_29
HTH_28
HTH_40
HTH_IclR
DUF3881
HTH_35
HTH_36
HTH_16
DUF722
HU-CCDC81_euk_2
wHTH-PRTase_assc
Motif
Other DBs
NCBI-ProteinID:
XBH01316
LinkDB
All DBs
Position
6287073..6287666
Genome browser
AA seq
197 aa
AA seq
DB search
MDVTNENLGLLIDKAKAGDQDAIQSLQRFENDIRLMVRVRLPRPLRSQFDSMDFVQDVWQ
SFFRIFNHDPERFAQVRDLRGFLAGVARNKVYEEYRRRSLTQKYDLEREEPLYIRRGNRD
IPRELIASDPTPSQDAQARERLDQLLEGRSPREAEVIELRRQGLTFEEIATQTGLHERTV
RRVIETIRRRMDARKEP
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaccaatgaaaacctgggccttttgatcgacaaggcaaaagcaggcgatcaa
gatgcgatccagagcctacaacgcttcgaaaacgacatccgtctgatggttcgagtccgg
ctgcctcggccgctccggtcacagtttgactcgatggatttcgtccaggacgtctggcaa
agtttctttcgaattttcaatcacgatccggagcggttcgcgcaggtccgcgacctccgc
ggttttctcgcaggggtggcgcgcaacaaggtctacgaggaataccgacgacgctccctc
acccagaagtatgacctggagcgtgaggaaccgctctacattcgtcgggggaatcgcgat
attccgcgggagctcatcgcctcagaccccacgcccagccaggatgcccaagccagagag
cggctcgaccaacttctcgaagggcgaagcccccgcgaagcggaggtcatcgagcttcgc
cgtcagggtctgacgttcgaggaaatcgccacgcaaaccgggttgcatgaacgcaccgtg
cgtcgggtgattgaaaccatccgtcgtcgcatggacgcccgcaaggaaccgtga
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