Singulisphaera sp. Ch08: V5E97_39735
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Entry
V5E97_39735 CDS
T11449
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sing Singulisphaera sp. Ch08
Pathway
sing03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sing00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V5E97_39735 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sing03019
]
V5E97_39735 (rnr)
03016 Transfer RNA biogenesis [BR:
sing03016
]
V5E97_39735 (rnr)
Enzymes [BR:
sing01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V5E97_39735 (rnr)
Messenger RNA biogenesis [BR:
sing03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V5E97_39735 (rnr)
Transfer RNA biogenesis [BR:
sing03016
]
Prokaryotic type
tRNA degradation factors
V5E97_39735 (rnr)
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GFIT
Other DBs
NCBI-ProteinID:
XBH04382
UniProt:
A0AAU7CHG1
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Position
10702225..10704501
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AA seq
758 aa
AA seq
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MTDPTDKVLDLVSEAEYKPMTVKAMSRRLGVDPEDYPSFRAAVKGMIKDGRLEIAKDKRL
SKPHTKGTIIGLFRRSAKGFGFVRPHTSKEKTDQIYIPIDQSRDASSGDEVAVKITKRPK
GPGMNVEGRIVQILERASGIFVGTYYEELGAGFVRVDGTTFGAPIYVGDPGAKGAKPSDK
VAIEMVSYPTPYAAGEGVISEILGPRGQPGVDTLGVIRAFNIPDTFDEETLNEARKLGKQ
FSETEIGDRLDLRGTLTVTIDPATARDFDDAITLSRDERGFWSLGVHIADVSHFVQPNSN
LDRTARQRGTSVYLPDRVIPMLPEVISNSLASLQAGKVRYTVSALLEFNSEGIRTGLSFA
RSAINVDHRFSYEDAFKVMKEPATTHEGVAPEVARMLGEMLELAQILRRRRFERGALELN
MPAVEVDLGEQGEVVGAHLASNDESHQVIEDFMLAANEAVATFLTEKHAGFLRRTHADPE
PTKLDAFAEFARSLGLEIENPQSRFELQRILIETAGKPEEYAVHYGVLRSLKQAVYTPEA
EGHFALASENYCHFTSPIRRYPDLQVHRQLTTLLEGKRPKSDHDELTVLADHCTKTERRA
EAAERELVKIKLLTYLESRIGEAFQAIIIGVEEFGLFCRIVNLPVDGLVHITSLADDYYY
LEFETHTLIGRRSGRRYRLGDHIEVRITRIDIDRRELDLAPADIQEEESRPKRPGATTST
PEARRSRPPASSLAKAARSKSNPKSSKKKKGKGKRSKG
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgacagacaaggtgttagatctggtctccgaggccgaatacaagccgatg
acggtgaaggcgatgtcgcgccgactcggggtcgatcccgaggattacccctcgtttcgg
gcggccgtcaaggggatgatcaaggatggccgcctcgagatcgccaaagacaagcgactg
agcaagccccacacgaaaggtacgatcatcggcctcttccgacggtcggcgaaaggcttc
ggcttcgttcgcccccatacgtcgaaagagaagaccgaccagatctacatcccgatcgac
cagagccgcgacgcctcgagcggcgacgaggtcgcggtcaagatcaccaagcggcccaaa
gggccggggatgaacgtcgaaggtcggatcgtccagatcctcgagcgggcgtccgggatc
ttcgtggggacctactacgaggagttgggggccggattcgtacgcgtggacggcaccacc
ttcggcgcaccgatctatgtcggcgatcccggagccaaaggggcgaagccgtccgacaag
gtcgcgatcgagatggtttcctatccgaccccgtatgccgcgggggagggggtgatcagc
gagatcctcggcccacgcggccagcccggtgtcgacaccttgggggtaatccgcgcgttc
aacatccccgataccttcgacgaagagacgctcaacgaagccaggaagttgggcaagcag
ttctcggagacggagatcggcgaccgactcgacctccgcggcacgctcacggtcaccatc
gacccggccaccgcgcgtgacttcgatgacgcgatcaccctctcacgcgacgagcgaggc
ttctggagcctgggagtccatatcgccgacgtctcccacttcgtgcagcccaactcgaac
ctcgatcgcaccgcacgtcagcgtggtacgagcgtctatctgcccgatcgggtcatcccg
atgctccccgaagtcatctccaatagcctggcgagcctccaggccggcaaggtccgctac
accgtcagcgctctcctggaattcaactccgaggggatccgcaccggcctgagcttcgca
cgctcggcgatcaacgtcgaccaccggttctcctacgaagacgccttcaaggtgatgaag
gagcccgcgaccacccacgaaggggtcgcccccgaagtcgcccgcatgctcggcgagatg
ctcgagctcgcccagattctccgccgccgccgcttcgagcgcggggcgttagagctgaac
atgccggcggtcgaagtcgatctgggcgaacaaggggaggtcgtcggggcccatctcgcc
tcgaacgacgagagccaccaggtgatcgaagacttcatgctcgcggccaacgaagccgtc
gcgaccttcctgaccgagaagcacgccggctttctccggcggacccatgccgaccccgag
ccgaccaagctggacgcattcgccgagttcgcccgaagtctgggcctggagatcgaaaac
ccgcagagtcggttcgagctccaacgcatcctgatcgagacggcgggcaagcccgaagag
tatgcggttcactacggtgtccttcgcagcctgaaacaggcggtctacacgcccgaagcc
gaaggacacttcgccctggccagcgagaactattgccacttcacctcaccgattcgccgc
tatcccgaccttcaggtccaccgccagttgacgaccctgctcgaagggaagcggcccaag
agcgaccacgacgagctgaccgtcctggctgaccattgcacgaagaccgagcgccgcgcg
gaggccgcggagcgcgagctcgtgaagatcaagctcctgacctatctcgagagccggatc
ggtgaagcgttccaggcaattatcatcggggtcgaggagttcggcctgttctgtcgaatt
gtcaacctgccggtcgacggactcgtccacatcacgagcctcgccgacgactattactac
ctcgaattcgagacgcataccttgatcggccgccgctccggccgccgctaccggttagga
gaccacatcgaggtccggatcacgcgcatcgacattgatcggcgggagctcgacctcgcc
cccgccgacatccaggaggaggaatcccgcccgaaacggccgggagcaacgaccagcacg
cccgaggcgcgccggtctcgccctcctgcctcaagcctggccaaagccgctcggtcgaag
tcgaatccaaagagctcgaaaaagaagaaggggaaaggaaagcgatcgaagggttga
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