Sinomicrobium kalidii: LS482_00380
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Entry
LS482_00380 CDS
T07760
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS482_00380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinh03019
]
LS482_00380
03009 Ribosome biogenesis [BR:
sinh03009
]
LS482_00380
Enzymes [BR:
sinh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LS482_00380
Messenger RNA biogenesis [BR:
sinh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LS482_00380
Ribosome biogenesis [BR:
sinh03009
]
Prokaryotic type
rRNA helicases
LS482_00380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Herpes_MCP
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UGU16340
LinkDB
All DBs
Position
92182..93891
Genome browser
AA seq
569 aa
AA seq
DB search
MNKFEKLGLNEQLLMAIEDMGFETPSEVQEKAIPVLLANDTDMVSLAQTGTGKTAAFGFP
LIQKINANDKTTQGLILSPTRELCLQITNELKNYAKYVKGLRVVAIYGGASITEQARDVK
RGAQIIVATPGRMQDMINRRMVDITEIEYCVLDEADEMLNMGFYEDISSILSHTPKEKNT
WLFSATMPREVATIAKKFMHSPEEITVGTKNSGTDTVQHEYYLVNGRERYLALKRLADAN
PDIFSVIFCRTKRDTQNVAEKLIEDGYNAAALHGDLSQNQRDMVMKAFRTRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIEIYNHRSGRTGRAGKSGISIVIVAKSELRKIKAIEKV
LKKQFEAKKIPSSMEICEIQLYHLASKIKNTEINEEVNHYLPAINDVLRDIDREELIKKM
VSVEFGRFFNYYKNAKDLNVNATGRDKAPAVDDIPGEGDVRYFINVGERDGYDWKSLKDF
LRDTVDLDRDDIFKVDVKESFSFFNTNAAHTEIILQTFTDFKKDGRFVNIEISKNPGGSH
KGRGRKRNGNKFSGPNKGFGKKGRKGRRR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaattcgaaaaattaggactgaacgagcagcttttaatggctattgaagatatg
ggttttgaaacaccctcagaggtgcaggaaaaagctataccggtcctcctcgccaatgat
accgatatggtatccctggcacaaacaggaacgggaaagaccgcagctttcggtttcccg
ctcatccagaagatcaatgcaaacgacaaaaccacacagggattgatcctttcccctaca
agggaattgtgcttacaaattaccaatgaactgaaaaactatgccaaatatgtcaaaggc
ctccgcgtcgtagccatttacggcggcgccagtattaccgaacaggccagggatgtaaag
cggggagcacagatcatagtggctactccgggaagaatgcaggatatgataaaccggcgt
atggtggatatcaccgaaatcgagtactgtgttctggatgaagcagacgaaatgctaaac
atgggattctacgaagatatttcctccatcctttcgcataccccgaaagaaaagaacacc
tggctcttctcggccaccatgcccagagaagtggcgaccatcgccaagaaattcatgcac
agccccgaagaaatcaccgttggcaccaaaaattcgggaacagatacggtacagcacgaa
tactatcttgtaaacggaagggaacgctacctggcgctgaagcgcctggccgatgccaat
ccggatatattttcggtaatattctgccgtaccaaaagggatacacaaaatgtagccgaa
aagcttatcgaagatggctacaatgctgcggcccttcacggcgacctgagccagaaccag
agggatatggtaatgaaagccttccggaccaggcagatacagatgcttgtggccactgac
gtagccgcaaggggaatcgatgtcgatgacattacccatgttatcaactatcaacttccg
gacgaaatagagatctataatcaccgcagcggacgaaccggacgtgccggaaaatccggg
atatccatagtgatcgttgccaaaagtgaactgcgaaagataaaagccattgaaaaggtc
ttaaaaaaacagttcgaagccaaaaagatcccgagcagtatggagatctgtgaaatacag
ctctaccacctggccagtaaaattaaaaacacggagatcaatgaagaggtgaaccactat
ctcccggccatcaacgatgtactccgtgatatagaccgcgaagagctcatcaagaaaatg
gtctcggtggaattcggcaggttcttcaactattacaaaaatgccaaggacctgaacgta
aatgccacaggacgcgataaagctcccgctgttgatgatattccgggagaaggtgatgtt
cgctattttatcaacgtcggcgaaagggacggttatgactggaaatccctgaaggacttt
ttacgtgataccgtcgatcttgacagggacgatatctttaaagtggatgtcaaggaaagc
ttttcctttttcaatacgaatgccgcgcacactgaaatcattcttcagacctttaccgat
ttcaagaaggacggccgttttgtgaatatcgaaatttccaagaatcccggcggaagccat
aaaggacggggccgaaaacgcaacggtaacaagttttccgggcccaataaaggttttggt
aaaaaagggagaaaaggcagaagacgataa
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