Sinomicrobium kalidii: LS482_00920
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Entry
LS482_00920 CDS
T07760
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS482_00920 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinh03019
]
LS482_00920 (rny)
Messenger RNA biogenesis [BR:
sinh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LS482_00920 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4407
Motif
Other DBs
NCBI-ProteinID:
UGU16445
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All DBs
Position
complement(232787..234349)
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AA seq
520 aa
AA seq
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MDTTMIIVAGIVGVALGLIIAKFMEKKNASKILANAKREAASIVKEATAEGESLKKDKIF
QAKEKFLELKAEHEKVIVAKDKKIAEIEKRAKDKEAQVNGELSKNKKLTEALETKAKDYD
YRMEILEKKQAEVEKLHKSQVKQLEIISGLPAEDAKSQLIESLRDDARSDAMSYVQNTLE
EAKLTAQQEAKKVIINTIQRIGTEEAIENCVSVFNLESDDIKGRIIGREGRNIRALESAT
GVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVTDGRIHPARIEEVVQKTTKQIEEEII
EVGKRTIIDLGIHGLHPELIKMVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPKL
AKRAGLLHDIGKVPESETEMPHAILGMEWAEKYGEKPDVCNAIGAHHDEVEMKSLIAPIV
QVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFNGVKKAYAIQAGRELRVIVESERVN
DDKASELSFEISQKIQTDMTYPGQVKVTVIRETRSVNIAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatacaactatgattattgttgcaggtatagttggcgtggccctggggcttattatc
gccaagtttatggaaaagaaaaatgcatctaagatattggctaacgctaaaagagaagca
gcatccattgtcaaggaagccaccgcagaaggggagagccttaaaaaagacaaaatattt
caggcgaaggaaaagttcctggaactcaaagcggaacacgaaaaagttattgttgcaaaa
gataagaagatcgccgaaatagaaaaacgtgccaaagacaaggaagcacaggtaaacggg
gaactgtccaaaaacaagaaactgaccgaagcgctggaaacgaaggcgaaggactacgat
taccggatggaaatactggagaagaaacaggcagaggtagaaaagctgcacaaaagccag
gtgaaacaactggaaatcatttccggtctgcccgccgaagacgccaaaagccagttgatc
gaatccctgagggatgatgccaggagcgacgccatgagctacgttcagaatacactcgaa
gaagccaaactcactgcccagcaggaagccaagaaggtcatcataaacaccatacagcgt
attggtacggaagaagcgatagaaaactgtgtttccgtgttcaatcttgaatccgacgac
atcaaggggaggattatcggccgggaaggaaggaatatccgggcactggaatccgctaca
ggggtcgagattattgtagacgatacccccgaggccattatactgtcgtgtttcgattcc
gtaaggagagaaatcgcccgtttgtccctgcataaactggtaaccgacggaagaatacac
ccggcacggatagaagaagtagtacaaaaaaccaccaaacaaatagaagaagagatcatt
gaagtagggaagaggacgattattgacctgggtattcacgggctccaccccgagctgata
aaaatggtgggacggatgaaataccgttcttcctacggacaaaacctgctgcaacactcc
cgcgaagtagccaaattatgcggggtgatggcagcggaattaggattaaacccgaaactg
gccaaacgtgccggactgctccacgatataggaaaagtaccggagtccgaaaccgaaatg
ccacacgccatactcggtatggaatgggcggaaaaatacggggaaaaacccgatgtgtgc
aatgccatcggtgcacaccatgacgaagtggaaatgaaatcgctcatagcgcctattgtc
caggtgtgcgatgccataagcggtgccaggccgggggcgagaaggcaggtgctggattcc
tatatacaacgtctcaaggacctggaagatattgcctttgggtttaacggcgtaaaaaag
gcctatgccatacaggccggccgggaactccgtgtaattgtggaaagcgaaagggtgaat
gacgataaggcttccgagctctcttttgagatatcacagaaaatacaaacggatatgacc
taccccggccaggtaaaggtaacggtcatcagggaaacgaggtcggtgaacatcgcgaag
taa
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