Sinomicrobium kalidii: LS482_04125
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Entry
LS482_04125 CDS
T07760
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LS482_04125 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinh03021
]
LS482_04125 (rpoC)
03400 DNA repair and recombination proteins [BR:
sinh03400
]
LS482_04125 (rpoC)
Enzymes [BR:
sinh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LS482_04125 (rpoC)
Transcription machinery [BR:
sinh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LS482_04125 (rpoC)
DNA repair and recombination proteins [BR:
sinh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LS482_04125 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UGU17064
LinkDB
All DBs
Position
complement(1051300..1055601)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARGKDKNTVTRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGAAKNQEGEPLQKMDFLTEEEYLNVLDSLPQENLY
LEDSDPEKFIAKMGAECIIELLNRIDLDALSYDLRHKANNETSKQRKTEALKRLQVVEAL
REAQQNRENKPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKMYECGLPKDMAAEIYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILDNVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERRSTPEE
PVKGEGLTFYSPEEVIIAYNEKKVDLNAIIKVRTIDFDDKGELTRQIIETTVGRVLFNEV
VPEKAGYINTVLNKKSLRDIIGYVLKVTDVPTTSDFLDKIKNTGYRMAFRGGLSFSLGDI
IIPEEKHQMIGEANEQVDGIMMNYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
KQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTADCGTLRGVEVEALKKNE
EIVESLGERILGRVSLHDVYDPLTEELLVESGEEISEEIVKKINASPLERLEVRSALTCE
AKHGICAKCYGRNLATGKMVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LLAKFNGIATIEDLKTVKSENSEGKVVDVVISRTSEVKVTDEKTGIVLSTSNIPYGSQIF
IKEGEKISKGDVICQWDPYNGVIISEFSGSIAYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLLIKGSKGETLRSYNLPVGAHIMVDDGEKIKEGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEIKKYLVKLSNQILV
QENDFVRAGMPLSDGSVTPEDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRINDPGDTIFLEGQLVHKDDFIEENDGLFGKKVVEDAGESANLKPGQIVTLRQL
RDENSILKRADKNLVVARDVVPATASPVLQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHKIPAGTGMRDYDNIIVGSKEEYDEIMSNKKEASLY
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaggaaaagataagaatacagtaacgagatttaacaagatctccataggcctg
gcgtcgccggagtctatcctggcggagtcacgcggagaggttttaaagccggaaaccata
aattaccggactcataaaccggaacgtgacgggctgttttgtgaacggatttttggtcct
gttaaggactacgaatgtgcttgtggaaaatacaagaggatcagatataaaggcattgtt
tgcgaccggtgtggtgtagaagttactgagaaaaaagtacgaagagaccgcgtagggcac
atcaaccttgttgttcctattgcacatatatggtatttcaggtccctgcccaacaagata
gggtacctgctggggcttccttccaagaagctcgacatgattatctattacgagcgttac
gtggttatccagcccggagcggctaaaaatcaggaaggagaaccgttacagaaaatggat
ttccttaccgaagaggaatacctgaacgtactggacagccttccccaggaaaacctgtac
ctggaagacagtgatcccgagaagttcattgcgaaaatgggagcggaatgtatcattgaa
ctcctgaacaggattgacctcgatgcactgtcttacgacctgcgtcacaaggccaataat
gaaacctccaaacaaaggaagaccgaagccctgaaaaggctccaggtggtggaagcgctg
cgcgaagcacaacaaaacagggaaaacaaaccggagtggatgatcctgaaggtcatcccg
gtcattccgccggaactgcgcccgctggtgccgctggacggagggcgttttgccacttcc
gacctgaacgacctttaccgaagggtaatcataaggaacaaccgcctgaaaagactcatg
gaaattaaagcaccggaagtgatcctccggaacgaaaagaggatgctccaggaatctgta
gactcgttgttcgataatacccgtaagtcttccgcagtgaagaccgagtctaacagaccg
ctgaaatccctgtccgattccctcaagggtaaacaaggacgtttccgtcaaaacctgctc
ggtaaacgtgtggactattccgcgcgttcggtgatcgttgtaggtccggaactgaaaatg
tacgagtgcgggctgccgaaagacatggctgcggaaatttacaaacccttcgttatccgt
aaactgatagaacggggcatcgtaaaaaccgtaaaatccgcgaagaagatcattgacagg
aaagaacccgtggtatgggacatcctggataacgtgatcaagggacacccggtattactg
aaccgggcccccacgctgcacaggcttggtatccaggctttccagcccaaactgatagaa
ggtaaggccatccagctgcacccgctggcgtgtacggcatttaacgccgacttcgacggt
gaccagatggcggtacaccttccgcttggtccggaggccatactggaggcacaactgtta
atgctggcttctcataacatcctcaacccagcaaacggttcaccgattaccgtgccttca
caggatatggtactcggactgtattatatgaccaaggaaagaaggagcaccccggaagaa
cctgtaaaaggagaagggcttaccttctattctccggaagaggtgatcattgcatataat
gaaaagaaagtcgatttgaacgctatcattaaagtcagaaccatagactttgacgataag
ggagaattgacacggcagatcatagaaactactgtaggtagggtgttgttcaacgaagtg
gttccggaaaaagccggttacatcaacaccgtacttaacaagaagtcactgagagacatt
atcgggtacgtattaaaagtaaccgatgtgcctaccacttcagactttctggacaagata
aagaataccggatacaggatggcatttcgtggaggattgtcgttcagtctcggggatatt
attatccctgaagaaaaacaccagatgataggtgaagccaatgagcaggtggacggtatt
atgatgaactacaacatgggattgatcaccaataacgaacgttataaccaggtgatcgac
gtgtggacatcaaccaatgccatgcttaccgaactggccatgaagcgtatccgggaagac
aaacagggcttcaactccgtgtttatgatgctcgactccggggcgaggggatcgaaggaa
cagatccgacagcttacgggaatgcggggactgatggccaagccgaagaaatctacggca
ggaggcggtgaaattattgaaaaccccatcctgtccaactttaaggaaggactttccatc
ctggaatactttatctccacccacggtgcacgtaaaggtcttgcggataccgcccttaaa
acggccgatgccggttacctgacacgtcgtctggtggatgtttcccaggatgtcattatc
aatactgccgattgcggaaccctgaggggcgtagaagtggaagccctcaagaagaacgaa
gagatcgttgaatcactcggggagcggatactcggacgtgtatcactgcacgatgtttat
gatccgcttacggaagaactgttggtagaatccggagaggagatctccgaggagatcgtg
aaaaagatcaacgcttctccactggaaaggctcgaagtacgttctgccctcacctgtgaa
gcaaaacacggtatctgtgccaagtgctacggccggaacctcgctaccggtaaaatggta
caacggggagaagcagtgggtgtgattgccgcacaatctatcggggagcccggtacacag
ttgacacttcgaacgttccacgttggtggtatcgccggaaacatctccgaagaaaacaag
ctgctggccaagttcaacggtattgccacgatagaagacctcaaaaccgtaaaaagtgaa
aatagcgaaggaaaggtagtagatgttgtaatatcccgtacgtctgaggtgaaggtcact
gatgaaaaaacgggcatagtattgagtaccagtaatattccttacggatcgcaaatcttt
atcaaggaaggcgaaaagataagcaaaggcgatgtaatctgtcagtgggacccttataac
ggtgtgattatctccgaattctccgggagcattgcttacgagaatatagaacaaggggta
acttatcaggttgagatcgacgaacaaaccggcttccaggaaaaggttatttccgaatcc
aggaacaagaaactcattcctaccctgcttatcaaaggcagcaagggagagaccctgcgt
tcgtacaacctccccgtaggtgcacatattatggtggacgacggtgagaagatcaaggaa
ggtaaggttctggttaaaataccgcgtaaatcggccaaggccggggatattaccggtggt
ctgcccagggttaccgaactcttcgaagcaaggaacccgtcaaatcctgccgtcgtttcc
gaaatagacggtgtggtttcgtttggtaagataaaaagaggtaatcgcgagatcattgtg
gaatccaaactgggagaaattaaaaaatatctcgtgaagctttccaatcagatcctcgtt
caggagaatgacttcgtgagagcgggaatgccgttgtctgacggttccgtgactccggaa
gatatcctgaacatcaaaggaccttctgccgtacagcagtacctggttaacgaagtacag
gaagtttatcgcctgcaaggggtgaagatcaacgacaaacactttgaggtagtggtacgt
cagatgatgcgaaaagtgcggatcaacgatcccggcgatactatcttcctggaaggacaa
cttgtccataaagatgactttatcgaagagaatgacggactgttcggtaaaaaagttgtt
gaggacgcgggagaatccgccaacctcaaaccgggccagatcgttacattgcgccagctg
agggacgaaaattccatcctcaagcgggcagacaagaaccttgttgtggccagggatgtg
gttccggctacagcttcaccggtacttcagggtattaccagggcgtcactgcaaaccaaa
tcgttcatctcagccgcatcgttccaggaaaccaccaaggtgctgaacgaagctgctgtg
agcggtaaggtagacacactggaaggactgaaggaaaatgtcatcgtagggcacaagata
cctgcgggaactggtatgcgcgactatgataatatcatcgtaggttccaaggaagaatac
gatgagatcatgagcaataagaaagaagccagtctttattaa
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integrated database retrieval system
