Sinomicrobium kalidii: LS482_09280
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Entry
LS482_09280 CDS
T07760
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LS482_09280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinh03019
]
LS482_09280 (rnr)
03016 Transfer RNA biogenesis [BR:
sinh03016
]
LS482_09280 (rnr)
Enzymes [BR:
sinh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LS482_09280 (rnr)
Messenger RNA biogenesis [BR:
sinh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LS482_09280 (rnr)
Transfer RNA biogenesis [BR:
sinh03016
]
Prokaryotic type
tRNA degradation factors
LS482_09280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_HELZ2
S1
S1CSD-TOTE-2
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
UGU18059
LinkDB
All DBs
Position
complement(2313168..2315363)
Genome browser
AA seq
731 aa
AA seq
DB search
MSRKKKHAEKQKKNEITKGIFSVLEKNPKESFNYKQLASRLGIKDTNGRNLLIKKLGQLK
EKEKIEEVERGRYRAIPSKNYFTGTVDVTGRGNAYVVCDDLDQDVFVPSNMLNRAFHGDE
VEVYVFPRRRKNSKKLEGEITKVISRKKTAFVGIVQIQKNFAFVLPTDFRMYSDIFVAKN
KINGAENGDKVLVEITEWPEKADSPYGRITEVFGKPGDHDTEIHAILAEYGLPYTFPEEV
EHFANKLDTSITPEEIKKRRDMRDVLTFTIDPRDAKDFDDALSFRVLDNGNYEIGIHIAD
VSHYVVPGTLLDEEAYNRATSVYLVDRVVPMLPEILSNNACSLRPQEEKYTFSAVFEMND
KAEVLNQWFGRTVTYSDRRFAYEEAQAILESGNNEVPEAVSLTGKAYKVEKETAEAICNL
DRLAKKMRTRRMRMGAISFDKVEVKFHLDEDKVPTGVYFKEAKDANKLIEEFMLLANKKV
AEFIGRKKPQKTFVYRVHDEPDDEKLMQLQGVISRFGYALNMKSRKTITSSLNSLLEEVQ
GKKEQNLVDTLAIRTMSKAEYTTHNIGHYGLAFDFYTHFTSPIRRYPDVMVHRLLQHYLD
GADSAKEEEYEERCRHSSSMENLAVNAERDSIKYMQIKFMEERTDQEFVGVISGVTEWGI
YVEIIENKCEGMIRIRDIRDDYYVFDDKQYALVGEVTKNMYQLGDEVIVKVKSTDLIKRH
LDFDLLGKAGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaagaaaaaacatgcagaaaaacagaaaaagaatgagattacgaaaggtatt
ttttctgtactggagaagaatccaaaagaatcctttaactataaacaattagcttccaga
ctgggaataaaagatactaacggaagaaatctgcttataaaaaaactgggccagctcaag
gaaaaggaaaaaatcgaagaggtggagcgcggtagataccgggccataccttcaaagaat
tatttcacgggaaccgtagatgttaccggaaggggaaatgcgtacgtggtgtgcgatgac
cttgaccaggatgtatttgtgccttcaaatatgttaaacagggcattccatggcgatgaa
gtggaagtgtatgtctttcccagacgaagaaaaaacagtaaaaagctggaaggagagatc
actaaggtcatctccaggaagaaaacggcttttgtgggaattgtacagatacaaaagaat
tttgctttcgtattgcctacggatttcaggatgtattcggatatttttgtagctaaaaat
aaaataaacggtgcggaaaacggggataaggtactggtggagatcacggaatggccggaa
aaggcagattcgccttacggaagaattacagaggtcttcgggaaaccgggcgaccacgac
accgaaattcacgctatactggcggaatacggtttgccttataccttcccggaagaagtg
gaacactttgccaataaactggatacttcaattactcccgaagaaataaaaaaacgtcgt
gatatgcgcgacgtacttacatttacaattgatcccagggatgccaaggactttgacgac
gcgttgtcgttccgggtgctggacaacggtaattatgaaataggcatacacatagccgat
gtatcgcactacgtggttcccggtactttgctggatgaagaagcatataacagggccact
tccgtctacctggtagaccgcgtggtaccgatgctgcccgaaatattgtccaacaacgcc
tgttccctgcgtccgcaggaagaaaagtacaccttttcggcggtttttgaaatgaatgac
aaggccgaggtgttaaaccagtggtttggccgtaccgtaacgtattctgaccgcagattt
gcttatgaagaagcgcaggcaattctggaaagcggaaacaatgaagttccggaagcggta
tcactcacgggaaaagcttataaagtggagaaggaaacggccgaagcgatatgcaacctg
gacaggctggcaaagaaaatgcgcaccaggcggatgcgcatgggagccatttcgtttgac
aaggtggaagtgaagtttcatctggacgaggataaggtacctaccggagtttatttcaag
gaggccaaggatgccaacaaactgatcgaggaattcatgttactggccaacaaaaaggtt
gcagaattcatcgggaggaagaaaccgcagaaaacatttgtatatcgggtacacgacgaa
ccggacgacgaaaaattaatgcagttacagggcgttatttccaggtttggatacgctctt
aacatgaagagcagaaaaaccattacaagttctttaaacagccttctggaagaagtgcag
gggaaaaaggaacaaaacctggtagatactttggccatacgaaccatgagtaaggcagaa
tataccacgcataatatcgggcattacggattggcatttgatttttatacccattttaca
tcaccgatacgaaggtatcccgatgttatggtacaccgtttgcttcaacattatctggat
ggtgcggattctgcaaaagaagaagagtacgaagagcggtgccgtcattcttccagtatg
gagaacctcgcagtaaatgcagaacgcgattccattaaatacatgcagatcaagttcatg
gaagagcgtacggatcaggaatttgtcggagtgatctccggtgtgaccgaatggggcatt
tatgtggaaatcattgaaaacaaatgcgaaggcatgatacggatacgcgatattcgggac
gactattatgtctttgacgataagcagtatgccctggtaggggaagttaccaagaacatg
taccaactgggtgatgaagtaatagtcaaagtgaagagcactgacctcataaaacggcat
cttgattttgatttgctcggaaaagcgggagaatag
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