Sinomicrobium kalidii: LS482_21410
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Entry
LS482_21410 CDS
T07760
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sinh
Sinomicrobium kalidii
Pathway
sinh03030
DNA replication
sinh03430
Mismatch repair
sinh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LS482_21410
03430 Mismatch repair
LS482_21410
03440 Homologous recombination
LS482_21410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinh03032
]
LS482_21410
03400 DNA repair and recombination proteins [BR:
sinh03400
]
LS482_21410
Enzymes [BR:
sinh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LS482_21410
DNA replication proteins [BR:
sinh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LS482_21410
DNA repair and recombination proteins [BR:
sinh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LS482_21410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
GIY_YIG_2
DUF7508
Rv2179c-like
T5orf172
Motif
Other DBs
NCBI-ProteinID:
UGU16222
LinkDB
All DBs
Position
5309672..5311057
Genome browser
AA seq
461 aa
AA seq
DB search
MYAILDIETTGGQYNEEGITEIAIYKYDGHKVTDRFISLVNPEREIQPFVVNLTGINNTM
LRSAPKFYEVAKRIVEITEDCILVAHNAQFDYRILRTEFQRLGFEYQRKTICTVELSQKL
IPEADSYSLGKLVRSLGIPVSDRHRASGDAQATVKLFKLLLAKDQSKEIVRASIKSENTG
TLSPKLLNIVEQLPEKVGVYYIHREDGGIIYIGKSKNIKRRVNQHFARTAKKARLIQKEV
VAVTYEETGNELIALLKENEEIKKNQPKYNRSRKRKLFAYGLFQQKNEHGYTELFTDRLK
NNRSSALRKPVATFTSIHEAKNTLYKLTEEFELCNKLTGLSDAKKHCFNYSIQKCKGACI
NLESTGEYNERAENAVKKYSYPHNNMLIIDKGRETGERSVVMIEKSEFKGIAFYDLNYQI
NNIDILKQVLTPMKNNADARHIIQMYLRKNNGYKIIEYSQK
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtacgctattttagacatagaaaccacaggaggacaatacaacgaagaaggcattacg
gaaattgccatttacaaatatgacggacataaggtaacggaccgttttatcagcctggtc
aacccggaacgggaaatacagccttttgtagtcaacctgacgggaatcaacaataccatg
ctaagatcggccccgaagttttatgaagtggccaagcggatcgtggagataacggaggac
tgtatcctcgtagcccacaacgcccaattcgattaccggatattgcggacggagtttcaa
cggctgggtttcgagtaccaaaggaaaaccatatgcaccgtggaactttcacaaaaactc
atcccggaagcagattcctacagcctgggcaaactggtacgttcgctcggcatcccggtt
agcgatagacaccgggccagcggggatgcacaggccacagtaaagctctttaagctgctc
cttgccaaggaccagtccaaagagatcgtcagggcaagtataaaatcagaaaacacgggc
accctttcccccaaactccttaatattgttgaacaactcccggaaaaggtaggcgtttat
tacattcacagggaagacgggggcattatttacataggcaagagcaagaacataaagcgt
cgggtcaatcaacactttgcccggacggccaaaaaggcaaggcttatccagaaagaggtc
gtagccgtgacctatgaagaaaccgggaacgaactgatagccctgctcaaggaaaatgaa
gaaataaaaaagaaccagcccaaatacaaccggtccagaaagcgaaaactgttcgcttac
ggcctgtttcagcaaaaaaacgaacacggttacaccgaattgttcaccgaccggctgaaa
aacaaccgctcttcggcactgagaaaacccgtagccacctttacttcaatccacgaagca
aaaaatacgctgtacaaactcaccgaagagtttgagctgtgcaataaactcaccggattg
tcggatgccaaaaaacactgtttcaactactccatccaaaaatgcaagggggcctgtata
aacctggaatcgaccggagaatacaacgaacgggcagaaaacgcagtaaaaaaatacagt
tacccacacaacaacatgcttatcatcgacaagggaagagaaaccggagagcggagtgtt
gtgatgatcgaaaaatctgaattcaaaggtattgcgttttatgatttaaactatcagatt
aacaatatagatatcctgaaacaagtccttacccccatgaaaaacaatgccgacgccagg
catattattcaaatgtacctgcgcaagaacaacgggtataagatcatcgaatattcacaa
aaatga
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