Sinimarinibacterium sp. NLF-5-8: GT972_03075
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Entry
GT972_03075 CDS
T06400
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini02020
Two-component system
sini02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GT972_03075 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GT972_03075 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sini03021
]
GT972_03075 (rpoN)
Transcription machinery [BR:
sini03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GT972_03075 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
TetR_N
HTH_IclR
HTH_38
HTH_3
Phage_CII
MarR_2
HTH_23
HTH_31
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QHS09237
UniProt:
A0A6P1U7K1
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Position
608837..610351
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AA seq
504 aa
AA seq
DB search
MKAGLHVNLSQTMAMTPQLLQSIRLLQLSSLELEQELREALESNVMLEAVEPGDAEDAPD
AVTTDADDAAFDPPASESRDAVSNTTEEVATIRTDGAEALAEVSADFEWSSAESWSGGEP
PHDETGDSWEARMAQGETGDVHAHVLEQLQLVVQTPRQAQLVAAIVEAVDDNGYLTRSLE
QIAEARVWVPPLAEGELEAALRQVHGVEPSGYGARDLRECLWLQLAALPPQTPGRALALS
IVDTELALLASHDVAALARALEVDPQACLQAVDLVLALNPKPGASMELEAQAAVPDLVVS
GQPGLWKVALNAERLPRVRVNALYERMLTVEKHRAMREQLQEARWLVRGIEMRQDTLLRA
GQAIFERQVGFLERGEEGMAALTLREIADAIGMHESTISRVTSNKWVQTPWGVYELKAFF
PSQLTGREGDTSGTAVKAMIRRIIDAETTPLSDSDITAQLARSGVQVARRTVAKYREAMR
IAPVKERKAAARRETLRQQGQHIS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccggtctgcacgtcaatctttcgcagacgatggcgatgacgccgcaattgctg
caatcgatccggttgctgcaactgtcgtcattggagcttgagcaggaattgcgtgaggcg
ctggaaagcaacgtcatgctcgaagctgtcgagccgggcgatgcggaggatgccccggat
gccgtcaccactgacgccgatgatgcggcttttgatcctcctgcttccgaaagccgcgat
gcagtcagcaacaccaccgaagaagtggccaccatccgcacggatggcgccgaggccttg
gcagaggtttcggctgattttgaatggtccagtgctgaatcctggtcgggcggtgagcca
ccgcatgatgagacgggcgactcttgggaagcccggatggcccagggcgaaaccggtgat
gtgcatgcgcatgtgctggagcagttgcagctggtggtacaaacgccgcggcaggcgcaa
ctggttgcggccatcgtcgaggccgttgatgacaacgggtatttgacacgctctctggag
cagatcgccgaagcacgggtatgggtgccgccgctggccgagggtgaactggaggcggcg
ctgcgacaggtgcatggcgtagagcccagcggctacggcgcgcgcgatctgcgtgaatgc
ctgtggctgcaactggcggcattgccgccgcagacgccggggcgcgccttggcgctgagc
attgtcgataccgaacttgcgctgctggccagccatgatgtggcggctttggcgcgcgcg
ctggaggtcgatccgcaggcctgtttgcaggcggtggatctggtgttggcgctcaacccc
aagccgggcgccagcatggagctggaagcgcaggcggcagtgccggatctggtcgtcagc
ggccagcccggcctatggaaggttgcgctcaatgccgagcgcttgccgcgcgtgcgggtc
aatgccctgtacgagcgcatgctcacggttgaaaagcaccgcgcgatgcgcgaacagctg
caagaagcccgttggctggtgcgtggcatcgaaatgcgtcaggacacattgctgcgcgca
gggcaggcgatctttgaacggcaggttggttttcttgagcgtggcgaggagggcatggcg
gccttgacgctgcgtgagattgccgatgccatcggcatgcatgaatcgaccatcagccgg
gtcaccagcaacaagtgggtacagaccccgtggggggtgtatgagctcaaggcgtttttc
ccctcgcagctgaccgggcgtgagggcgatacctccgggacggcggtcaaggcgatgatc
cgcaggatcatcgatgccgaaaccacgccactgtccgacagtgacatcaccgcacaactg
gcgcgcagtggcgtccaggtggcgcggcggacggtggccaaataccgcgaagccatgcgt
attgcgccggtcaaggagcgcaaggcagcggcgcgccgggagacgctgcgccagcaaggg
cagcacatctcatga
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