Sinimarinibacterium sp. NLF-5-8: GT972_03955
Help
Entry
GT972_03955 CDS
T06400
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini03410
Base excision repair
sini03430
Mismatch repair
sini03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GT972_03955 (recJ)
03430 Mismatch repair
GT972_03955 (recJ)
03440 Homologous recombination
GT972_03955 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sini03400
]
GT972_03955 (recJ)
DNA repair and recombination proteins [BR:
sini03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GT972_03955 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GT972_03955 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GT972_03955 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
FMN_dh
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QHS09392
LinkDB
All DBs
Position
784021..785709
Genome browser
AA seq
562 aa
AA seq
DB search
MILRQRAPGDVRALPADLHPVLRRLYAARGVQASELALELKHLLPPSDLKGIDDAARALA
DAIQTHQPIVISGDYDADGATGTALGVLGLRALGATQVSYVVPDRFKMGYGLSEALAELA
AATGARVLVTVDSGISSVAGVARAQALGMQVIVTDHHLAGSELPRAQAIVNPNQPGCGFA
SKNLAGVGVMFYVLLATRAELRARGAFAQCAEPNLAEFLDLVAVGTVADVVKLDYNNRIL
VQQGLLRMRRGHMRPGLAALLQVARRSTERLNAQDFGFAIGPRINAAGRLDDIRTGIDCL
LAETLAAALPLAQQLDEFNRNRRSIEAQMNDDALDAIVGDDSVGLCLFGDDWHEGVVGIV
AGRLKERLHRPVIAFARAQEPGLLKGSGRTIPGLHLRDALAAIDAQYPGLIERFGGHAMA
AGLSLRMEALDAFKTVFDEQCRAMLTPQALQQVIETDGALAEDELTLPTAQLLEHAGPWG
QGFAEPLFEGEFAIHSARAVGSDGSHIKYLLRSGNELISAIDFGGAERMQTQGRIYCAYS
IGVNRWQGSESVDLRLMDVRAA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgatcctgcggcagcgcgcgcccggcgatgtgcgcgcgctgcctgccgatttgcatccg
gttttgcgtcgcctgtacgccgcgcgcggagtgcaggccagtgaactggcgctggaactc
aaacacctgctgccgccgagtgaccttaaaggcattgacgatgccgcgcgcgcgctggcc
gatgccattcaaactcatcagcccatcgtcatcagcggcgactacgacgccgacggcgcc
accggcaccgcactgggcgttttggggctgcgcgcgctgggcgcaacgcaagtgagttac
gtcgtccccgaccgtttcaaaatgggctacggcctgtctgaggcgctggccgaactcgcc
gccgccaccggcgcgcgcgtgctggtcacggtggacagcggcatcagcagcgtggcgggc
gtggcgcgcgcgcaggcgctggggatgcaggtcatcgtcaccgatcaccacctggcgggc
agcgaattgccgcgcgcgcaagccatcgtcaaccccaaccagcccggctgtggttttgcc
tccaaaaacctcgccggtgtgggcgtcatgttttatgtgctgcttgccacccgcgccgaa
ctgcgcgcgcgcggtgcgtttgcccagtgtgccgaacccaatctggccgagtttttagat
ttggttgccgtcggcaccgtggccgatgtggtcaagctcgactacaacaatcgcatcctg
gtgcagcaaggcttgctgcggatgcggcgcggacacatgcgccccggcctggccgccctg
ctgcaagtcgcgcgccgatcaaccgagcgtctcaacgcccaggacttcggctttgccatc
ggcccgcgcatcaacgccgcaggtcggctggacgacattcgcaccggcatcgactgcctg
ctggccgaaacactggcagcggcgctgccgctggcgcagcagctcgacgagttcaaccgc
aaccgccgcagcattgaagcgcagatgaacgacgatgcgctcgacgccatcgttggcgac
gattctgttggcctgtgcctgtttggggacgactggcacgaaggcgtggtcggcatcgtc
gccggtcgcctcaaagaacgcctgcatcgccccgtcatcgcctttgcccgcgcgcaagag
ccgggcttgctcaaaggctccggtcgcaccattcccgggctgcacctgcgcgatgctctg
gcggcgatcgacgcccaatatcccggcctgatcgaacgctttggcgggcatgccatggcc
gctggcctgagtctgcgcatggaagcgctcgacgccttcaaaaccgtgttcgatgagcaa
tgccgtgccatgctcacgccgcaagccctgcaacaagtgatcgaaaccgacggcgcgctg
gctgaagatgagctgacgctgcccaccgcccaattgctcgaacacgccggcccctggggg
cagggctttgccgaacccctgtttgaaggtgaattcgccatccacagcgcgcgcgcggtg
ggtagcgacggcagccacatcaaatacctgctgcgcagcggcaatgagctgatctccgcc
atcgactttggcggcgccgaacgcatgcaaacccaaggccgcatttactgcgcctacagc
atcggcgtaaaccgctggcagggcagtgagagcgtggatttaagattgatggatgtgcgc
gcagcttga
DBGET
integrated database retrieval system
