Sinimarinibacterium sp. NLF-5-8: GT972_07765
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Entry
GT972_07765 CDS
T06400
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT972_07765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sini03019
]
GT972_07765
Enzymes [BR:
sini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT972_07765
Messenger RNA biogenesis [BR:
sini03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT972_07765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
P-loop_SecA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QHS10051
LinkDB
All DBs
Position
complement(1599541..1600917)
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AA seq
458 aa
AA seq
DB search
MFRSFSVSFETLGLAPALLRAIAAQGYTAPTPIQQRAIPAILAGRDVLAAAQTGTGKTAA
FTLPMLHRLQAEGGTAGGKRKPRALILTPTRELAAQISESVHSYGSDAAQLRSVLIFGGV
SINPQIDTLRRGVDVIIATPGRLLDHVQQGTVDLSHVRFLVLDEADRMLDMGFIRDIRRV
IEKLPKQRQNLLFSATFSADIRKLAEGLLVNPETIDIAPRNSAAEAVTQRAVFTDKAQKS
ALLSYMIGRFNWQQVLVFTRTKHGANRLCERLNKDGLSAAALHGNKSQNARLKALADFKA
GTVRVLVATDIAARGLDIDQLPYVVNFELPNVPEDYVHRIGRTGRAGQVGEAVSLISRDE
YDHWRGIERLLKQSIPAFEIEGFHPGTVVDTVSDDRPARSARRPAGRSTQKTPNKPAATH
TRPSQHRAAEPGHASKADGDAAQQRRRRPRRRARPAAE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgttcaggagtttttcagtgtcttttgaaacgctgggccttgcgcccgcgctgctgcgc
gcgattgctgcgcagggctataccgcacccaccccgatccagcaacgtgcgatccctgcc
attttggcggggcgtgatgtcctcgccgctgcacagaccggcaccggcaaaaccgcagca
ttcaccctgcccatgctgcatcgcttgcaggccgaaggcggcaccgccggtggcaagcgc
aagccgcgcgcgctgattctcacgccgacccgtgagctggcggcgcagatcagtgaaagt
gtgcacagctacggcagtgatgctgcgcagttgcgcagtgtgctgatctttggtggcgtc
agcatcaatccgcagatcgacacgctgcggcgcggcgtggatgtcatcatcgccacgccc
gggcggttactcgatcatgttcagcagggcacggtcgacctgtcacacgtgcgttttctg
gtgctcgatgaagccgatcggatgctcgatatgggctttatccgcgatattcgccgtgtc
atcgaaaagctgcccaaacagcgtcagaacctgctgttttctgccacgttctcggccgat
atccgcaagcttgccgaaggcttgctggtcaaccccgaaaccatcgacatcgccccgcgc
aacagcgccgccgaggcggtgacccagcgcgcggtatttaccgacaaggcgcaaaagtcg
gcactgctgtcatacatgatcggtcgtttcaactggcagcaggtgctggtattcacccgc
accaagcacggtgccaaccgtttgtgcgagcggctcaacaaggatggcctgagcgccgct
gccctgcatggcaacaagagccagaacgcgcgcctcaaggcgctggccgatttcaaggcc
ggtacggtgcgcgtgctggtggcaaccgacattgccgcgcgcggtctcgatattgaccag
ttgccctacgtcgtcaatttcgagctgccgaatgtgccggaagactatgtccaccgcatc
ggtcgcaccgggcgtgccgggcaggtgggcgaagcggtttcgctgatcagccgggatgaa
tacgaccactggcgcggcatcgaacggctgctcaaacaaagcattccggcatttgagatc
gaaggctttcatcccggtacggtggtcgataccgtttcggatgatcgtcctgccagatct
gcgcggcgtcctgccgggcggtcaacgcaaaaaacgccgaacaagcctgcggccactcac
acccgtccgtcgcagcatcgcgctgcggagccaggccatgcctccaaagccgatggcgac
gctgcccagcagcgccgccgtcgtcctcgtcggcgtgcgcgtcctgctgcggagtag
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