Sinimarinibacterium sp. NLF-5-8: GT972_08315
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Entry
GT972_08315 CDS
T06400
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT972_08315 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sini03019
]
GT972_08315 (pnp)
03016 Transfer RNA biogenesis [BR:
sini03016
]
GT972_08315 (pnp)
Enzymes [BR:
sini01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GT972_08315 (pnp)
Messenger RNA biogenesis [BR:
sini03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GT972_08315 (pnp)
Transfer RNA biogenesis [BR:
sini03016
]
Prokaryotic type
tRNA degradation factors
GT972_08315 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
Bac_luciferase
KH-I_KHDC4-BBP
KH_KhpA-B
aRib
WHD_MCM3_C
SPATA25
Motif
Other DBs
NCBI-ProteinID:
QHS10145
LinkDB
All DBs
Position
complement(1718814..1720919)
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AA seq
701 aa
AA seq
DB search
MSVPATPAAAIRKTFQYGNRTVTLETGAVARQASAAVLVTIDETVVMVSAVAKKEAKPEQ
DFFPLTVDYMEKFYAGGRIPGGFFKREGRPTEKETLTSRLIDRPIRPLFPEGFYNEIQIV
ATVMSLNPQVDGDIPAMLGASAALALSGVPFMGPIAAAKVGYKDGNYILNPSKTELETSD
LELVVAGTKDAVLMVESEAKVLPEPVMLGAVMFGHEQMQAAIQAINEFVAEAGKPQWVWQ
PADTSAVHAFVAQFEAAIAEAYTHTDKQSRYAKLDEVTQQAKAARPEDAVFTDNQIKSAL
EDLKAKIVRNRILDGQPRIDGRDRVTVRPLAMTTGVLPRAHGSALFTRGETQVMAVTTLG
TGKDYQIIDAVEGEWHDHFLFHYNFPPYCVGETGRMNAPKRREIGHGRLAKRGVAAVMPD
LSKEFPYVVRVVSEVTESNGSSSMASVCGATLALMDAGVPIKAPVAGVAMGLILEGERWA
VLTDILGDEDHLGDMDFKVTGTEEGVTALQMDIKVAGITGEIMAQALTQAKAGRLHILEQ
MNQVLDKPRSDLSRYAPRITTIKIHPDKIREVIGKGGSTIQAITRETGTSIDIDDDGTIK
IAAADGTAAEAAIHRIETLTRDIEVGAIYEGKVAKIMDFGAFVTIAPGKDGLVHISQLAD
KRVEKVEDVVKEGETVRVKVLEVSRDGKIRLSMKAIDVQTD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtacctgcaactcctgctgcggcgatccgcaaaaccttccaatacggcaaccgt
acggtgacgcttgaaaccggcgctgtggcgcggcaggcctctgcggcagtgctggtgacc
atcgacgaaaccgtggtcatggtcagcgcggtggccaaaaaagaagccaagcccgagcag
gactttttcccgctcacggttgattacatggaaaagttctacgcgggtggccgtattccc
ggtggctttttcaagcgtgaaggccggcctaccgaaaaagaaaccctcacctcgcgcctg
atcgaccgtccgattcggccgctgttccccgaaggtttttataacgaaatccagattgtg
gcgacggtaatgtcgctcaacccgcaggtggatggtgatatcccggcgatgcttggcgcg
tctgctgcgctggcgctgtccggcgtgccgttcatggggccgattgccgcagcaaaagtg
ggttacaaggatggcaattacatcctcaacccgtccaaaaccgagctggaaacctctgac
cttgagttggttgttgcgggcaccaaagatgctgtgctgatggtggaatccgaagccaag
gtgctgccggagccggtcatgctgggtgccgtgatgtttggccacgagcagatgcaggca
gcgattcaggccatcaatgagttcgtggccgaggccggcaagccgcagtgggtgtggcaa
ccggccgacacctcggcggtgcatgcgtttgtggcgcagtttgaggccgcaattgccgag
gcttacacccacaccgacaagcaaagccgctacgccaagctggacgaagtcacccagcag
gccaaggccgcgcgcccggaagatgctgtgtttaccgataaccagatcaaatcagcgctg
gaagacctcaaagccaaaatcgtgcgtaaccgcattttggacggtcagccgcgcatcgac
ggccgtgatcgcgtgaccgtgcgtccgctggcgatgaccacgggtgtgttaccgcgcgcg
catggttcggcgctgtttacccgcggggaaacccaggtgatggccgtgaccacactgggc
accggcaaggattatcagatcattgatgcggtggaaggtgagtggcatgaccacttcctg
ttccattacaactttcctccgtactgcgttggcgagaccggccgcatgaatgcgcccaag
cgccgcgaaatcggccacggccgtttggccaagcgcggtgtggccgcagtcatgcccgat
ctgagcaaagagttcccgtatgtggtgcgcgtggtgtcggaagtcactgaatccaacggc
tcctcctcaatggcctcggtttgcggcgcgacgctggcgctgatggatgcgggcgtgccg
atcaaggctccggttgctggcgttgccatgggcttgatcctggaaggcgagcgctgggcg
gtgttgaccgatattctgggtgatgaagatcacctgggcgatatggactttaaagtcacc
ggcaccgaagaaggtgtgaccgcgctgcagatggacatcaaagtcgccggcattaccggc
gaaatcatggcgcaggcgctgacgcaagccaaagcgggtcgtctgcacattcttgagcag
atgaatcaggtgctggataagccgcgcagcgatctgtcgcgctacgcgccgcgcatcacc
accatcaaaattcatccggacaaaatccgcgaagtcatcggcaaaggtggctccacgatt
caggcgattacgcgtgaaaccggcaccagcattgatattgatgatgacggcacgatcaaa
attgctgccgccgacggcacagcagctgaagccgcgattcatcgcatcgagacgctgacc
cgcgacatcgaagtgggcgcgatctacgaaggcaaggttgccaagatcatggactttggg
gcgttcgtcaccatcgcccccggcaaggatggcctggtgcacatctcccagctggccgac
aagcgcgtcgagaaggttgaggacgtggttaaagagggcgaaaccgtgcgcgtcaaagtg
ctcgaagtcagccgcgatggcaagattcgcctgtccatgaaggcgatcgacgtacagacg
gactga
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