Sinimarinibacterium sp. NLF-5-8: GT972_10690
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Entry
GT972_10690 CDS
T06400
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT972_10690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sini03019
]
GT972_10690
Enzymes [BR:
sini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT972_10690
Messenger RNA biogenesis [BR:
sini03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT972_10690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QHS11547
UniProt:
A0A6P1UDT3
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All DBs
Position
2241841..2243115
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AA seq
424 aa
AA seq
DB search
MKTTPTPNHLSDIRFADLGLHPTLLSGLQRLGFSHCTPIQAAALPHALKGQDLAGQAQTG
TGKTAAFLLATLQHLLSQPRAENDDGLQPRAFILAPTRELAVQIFKDAQGLAIDTGLRMT
VCYGGAGYESQRASIEAGIDLLIGTPGRLIDYYKQHAYSLKQIEVLVLDEADRMFDLGFI
ADIRYLLRKMPPPAQRKNYLFSATLSHRVLELAYEHMNNPQKIAIEPDQVTADRVNQAMI
HVANDEKLPLLVGILRQQHAKRSMVFINTKREAENVERGLQANGFEAHVLSGDVSQGKRL
RLLEDFKAGKLPVLVATDVAARGLHIPGVDLVINYDLPQDPEDYVHRIGRTARAGATGDA
ISLCCETWVYSLPAIEKYIGMSIPALEGGYDLIASDYITPPRAPRKHSGTARRGSGRPRT
RRNT
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
ataaaaaccacacccacgcccaatcatttatccgatatccggtttgccgatctgggtctg
cacccgactttgctcagtggcttgcagcggctcggcttcagtcattgcacaccgatccag
gcagcggcgctgccgcatgcgctcaaaggacaggatcttgccggacaagcacaaaccggc
accggcaaaaccgccgcttttttgcttgccaccctgcagcatttgctcagccagccgcgc
gccgaaaacgatgacggcctccagccgcgcgccttcatcctggcgccgacgcgtgagctg
gccgtgcaaatcttcaaggatgcgcaaggattggccatcgacaccggcctgcgcatgacc
gtgtgctacggcggcgccggctatgaatcgcagcgcgccagcatcgaagccggcatcgac
ctgctgatcggcacccctggccggctgatcgattactacaaacagcacgcctactcactc
aagcaaatcgaggtgctggtgctcgatgaagccgatcgcatgtttgacctgggcttcatt
gccgacatccgctacctgctgcgcaaaatgccaccgcccgcgcagcgcaaaaactacctg
ttctcggccaccctttcgcaccgcgtactggagctggcgtatgagcacatgaacaatccg
caaaaaattgcgatcgagcccgaccaggtcaccgccgatcgcgtcaatcaggccatgatc
cacgtcgccaacgacgaaaagctgccgctgctggtcggcatcctgcgacagcagcacgcc
aagcgcagcatggtgttcatcaacaccaagcgcgaagccgaaaacgttgaacgcggcctg
caagccaacggctttgaagcgcatgtgctctcgggcgatgtatcgcaaggcaagcgcctg
cgcctgctcgaagatttcaaagccggaaaactccctgtgctggtcgccaccgacgtcgcc
gcgcgcggcctgcacattcccggcgtcgatctggtgatcaactacgacctgccgcaagat
cctgaggattatgttcaccggattggccgcaccgcgcgcgccggtgccacgggtgatgcc
atctcgctgtgctgcgaaacctgggtctattcgctgcccgcgattgaaaaatatattggc
atgagtatccctgcgctcgaaggcggctacgacctcattgccagcgactacatcaccccc
ccgcgcgcgccgcgcaagcacagcggcaccgcaaggcgcggcagtgggcgcccgcgcaca
cgccgcaacacctga
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