Sinimarinibacterium sp. NLF-5-8: GT972_14865
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Entry
GT972_14865 CDS
T06400
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sini03000
]
GT972_14865
Transcription factors [BR:
sini03000
]
Prokaryotic type
Helix-turn-helix
Other families
GT972_14865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
GAF
AAA_2
AAA_5
HTH_AraC
AAA
Mg_chelatase
HTH_30
HTH_23
AAA_16
T2SSE
HTH_17
HTH_50
HTH_Tnp_ISL3
AAA_7
HTH_20
HTH_7
nSTAND6
Mga
NB-ARC
HVO_A0261_N
HTH_22
RNA12
Motif
Other DBs
NCBI-ProteinID:
QHS11301
LinkDB
All DBs
Position
3135074..3137119
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AA seq
681 aa
AA seq
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MKQQVNAVTHVSNVMNMVYEFPRVPSDIDRAVAYSWLRCANEHRIRPDKPIDPAVLERAQ
LRERQQRMEDLVAIARTEMDSLYEQISGSGYALLLTDTEGVILSERVDPTLREDFHNAGL
MTGANWSEAYEGTNGIGTCITERRPITIHLNDHFMSRHINLSCSASPIRDPSGDMIAVLD
ASCLSNIDSKASRMHSGALVNLSARLIEKCLFLRRNREHRVLRFHSRPEFVNLLHDGALA
VGHDGRIVAADEMAVMLLAAESRAQLVGTAVWELFDISERELAESLRTGTRQTILPIRDV
AHGRRYYGTLQGAQHEPLRTRRAPTEVVTVNARQSTESRHYTLAELSGSDPTMLRNLRCA
QRIANSTVSVLIHGPTGSGKEVFARAVHNASERAQNNFVAINCAAIPESLIESELFGYKP
GAFTGARRDGMRGRIQQSSGGTLFLDEIGDMPLQLQTRLLRVLEEREVTPLGSELSVQVD
LRLISASHRNLREMIAEGKFREDLYYRLNGITMELPALSARADIDEMIRRVLAEETLDGR
PVGIEMSAFELLMQHRWPGNLRELRNVIRTALAIAEGGVIRVVDLPQEVRTPMAAPIAHA
TFASVASPKQASSATDASTIGTGNPLLAAERAALLRAIETNRWNMTNTAQQLGMSRNTLY
RKLKQHGISATALRSDGLSHF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcaagtcaacgcagtcacgcacgtcagcaacgtgatgaacatggtctatgag
tttccgcgcgtgcccagcgatattgatcgcgcggtggcgtattcatggctgcgctgtgcc
aatgagcatcgcattcgccccgacaagccgattgatccggccgtgctggagcgcgcgcag
ctgcgtgaacgccagcagcgcatggaggatctggtggccattgcgcgcaccgagatggac
tccctgtatgagcaaatttcgggatcgggctatgccctgctgctgaccgataccgaaggc
gtgatcctcagcgaacgggttgatccgacgctgcgcgaggactttcacaatgccgggctg
atgaccggcgccaactggagcgaagcctacgaaggcaccaatggcatcggcacctgcatt
accgagcgccgcccgatcaccattcacctgaatgaccacttcatgagtcggcatatcaac
ctgagctgctcggcttctccgatccgcgatccctcgggcgacatgatcgccgtgcttgat
gcttcctgtctgagcaacatcgacagcaaggccagtcgcatgcattccggtgcgctggtc
aacctgtcggcgcggctgatcgaaaaatgcctgtttttgcggcgcaatcgcgaacatcgg
gtattgcgttttcatagtcgcccggagtttgtgaacttgttgcacgacggcgccctggcc
gtggggcacgatggccgcatcgtcgctgccgacgagatggcggtgatgttgctggcggcg
gagtcgcgcgcgcagttggtcggcacagccgtctgggagttgtttgacatcagtgagcgt
gaactggccgagtcgctgcgcaccggcacgcgccagaccattctgccgatccgcgatgtg
gcgcacggacgccgttactacggcactttgcagggcgcccagcacgagcctttgcgcacc
cgccgtgcgccaaccgaggttgtcaccgtcaatgcccggcaatccaccgagtcccggcat
tacaccctggccgagctgagcggctctgacccgacgatgctgcgcaacctgcgctgtgcc
cagcgcattgccaactccacggtctcggttctgattcatggccccaccggctctggcaaa
gaagtctttgcgcgcgcggtgcacaacgccagcgagcgcgcgcaaaacaactttgttgcg
atcaactgtgccgcgattcccgaatcgctgatcgaaagcgaactgtttggctacaagccc
ggtgccttcactggcgcgcgccgcgacggcatgcgcggccgcattcagcaatccagtggc
ggcaccctgtttctggacgagatcggcgatatgccgctgcaactgcaaacccgtctgttg
cgggtgctggaggagcgtgaagtcacgccgctgggcagcgagctgtcggtgcaggtggac
ctgcgcctgatcagtgcctcgcaccgcaacctgcgcgagatgattgccgaaggcaagttt
cgtgaagatctgtactaccggctcaacggcatcaccatggaactgccggccctgagcgcg
cgcgccgatatcgacgaaatgattcgccgcgtgctcgccgaagaaacactcgatgggcgt
cccgtcggcattgaaatgtcggcgtttgagctgttgatgcagcatcgctggccgggcaac
ctgcgcgaactgcgcaacgtcatccgcactgcgctggcgattgccgaaggtggggtgatc
cgcgtcgtggatctgccgcaggaagtgcggacgccgatggcagcgcccatcgcgcacgcc
acatttgcaagcgtggcttcgccaaaacaggcgtcctctgccacggatgcaagcaccatc
ggtaccggcaaccccttgctggccgccgagcgcgcggcgctgctgcgtgccattgaaacc
aaccgctggaacatgaccaacaccgcccaacaactggggatgagtcgcaataccctgtat
cgcaaactcaaacagcatgggatctcagccactgccctgcgcagtgacggactgtcacat
ttctag
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