Sulfitobacter indolifex: DSM14862_00424
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Entry
DSM14862_00424 CDS
T08028
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM14862_00424 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinl03019
]
DSM14862_00424 (pnp)
03016 Transfer RNA biogenesis [BR:
sinl03016
]
DSM14862_00424 (pnp)
Enzymes [BR:
sinl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DSM14862_00424 (pnp)
Messenger RNA biogenesis [BR:
sinl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DSM14862_00424 (pnp)
Transfer RNA biogenesis [BR:
sinl03016
]
Prokaryotic type
tRNA degradation factors
DSM14862_00424 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UOA17673
LinkDB
All DBs
Position
cDSM14862:complement(430129..432264)
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AA seq
711 aa
AA seq
DB search
MFNVTKKSIQWGEETLTLETGKVARQADGSVIATLGETSVMANVTYARQQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDMVAMIAASAALTISGAPFRGPIAGCRVGYEGGDYILNPTIDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELSEEEMLGAVKFAHEQIQPVIDLIIDLAEDAAKEPFDFQ
PDDYSDLSAAVKAAGEDEMRAAFAIADKQERTAAVAAARETIKGKLTEEQLEDKNLGSAM
KGLEASILRGDVVKTGKRIDGRRTDEIRDIVAETGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGPPGRREVGHGKLAWRALQAVLPA
ATDFPYTIRLVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYA
ILSDILGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITPEIMEKALAQAKDGRIHILGE
MNKALSGASDFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDEGIIKI
ASANGDAIKKAYDMIYSIVAEPEEGAVYTGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEVSKEEAAEG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgtaacgaaaaaatcgatccagtggggcgaagaaacgcttacactggaaacc
ggtaaggttgcccgtcaggcggacgggtcggtgattgccacgctgggtgaaaccagcgtt
atggccaacgtgacgtacgcacgtcagcaaaagccgggccaggatttcttccccctgacc
gtgcactaccaagaaaaatactatgccgccggtaaagtaccgggtggcttcttcaagcgt
gaggcccgccccaccgagaaagaaacactgaccgcgcgtctgatcgaccgtccgatccgc
ccactctttgtccccggcttcaaaaacgaagttctggtgatgtgtaccgtgctgagccac
gatctggtgaacgaccccgatatggtcgcgatgatcgccgcttctgccgcgctgaccatt
tccggcgcgccgttccgtggcccaatcgctggctgccgtgtgggttatgagggtggcgac
tacatcctgaacccaacaatcgacgacatgcaggacctgcgcttgaaccccgagcagcgc
ctcgatctggttgtcgccggcaccaaagacgctgtgatgatggtcgaatccgaagcctat
gagctgtcggaagaggaaatgctgggtgcggtgaaattcgcccacgagcagatccagccg
gttatcgacctgatcatcgatctggccgaagacgcggcgaaagagccgttcgacttccag
cccgacgattactcggacctgtctgctgctgttaaagctgccggtgaagacgaaatgcgc
gctgcattcgccatcgccgacaagcaagagcgcaccgccgctgttgccgctgctcgcgag
acgatcaagggcaagctcaccgaagaacagcttgaggacaagaacctcggctccgcgatg
aagggccttgaggccagcatcctgcgcggcgacgtggtgaaaaccggcaagcgtatcgac
ggtcgtcgcaccgacgaaatccgcgacatcgtggccgaaaccggcatcctgccgcggacc
cacggttcggcgctgttcacccgtggtgagacacagggtctcgtcgtgaccacactgggg
actggcgacgatgagcaattcatcgacgcgctgcacggcaacttcaaatcgaacttcctg
ctgcattataacttccctccctactcggttggtgaagttggtcgcgtcggccctcccggc
cgtcgtgaagttggccacggtaagcttgcttggcgtgccctgcaggccgttctgcccgca
gccacagacttcccctacaccatccgtctcgtgtccgagatcaccgaatccaacggctcc
tcgtcgatggcatcggtctgcggtggctcgctgtccatgatggacgcaggcgtgccgctg
aaatcggctgtggccggtgttgcaatgggtctgatcctcgaagatgacggctcctacgcg
atcctgtcggacatcctgggtgacgaagaccacctcggagacatggacttcaaagtggcc
ggtaccgaagcgggcatcacctcgctgcagatggacatcaaggtcgcaggcatcacgccc
gagatcatggaaaaagccttggctcaggccaaagacggccgtatccacatcctcggcgag
atgaacaaagcgctttcgggtgcttctgacttctccgtccacgccccacgcatcgagacc
atgcagatccccaccgacaagatccgtgaagtgatcggttccggcggtaaggtgatccgc
gagatcgtcgaagtctccggcgccaaggtcgacatcaacgacgaaggcatcatcaagatc
gccagcgccaatggcgacgccatcaagaaggcctatgacatgatctattcgatcgtggca
gagcccgaagaaggcgccgtttacaccggcaccgtggtcaagatcgtcgatttcggcgct
ttcgtgaacttctttggcaagcgcgacggtctggttcacgtgtcccagatcgaaaaccgc
cgcttgaaccatccttcggacgttctgaaggaaggccaggaagtgaaagtgaagctcttg
ggctttgacgatcgcggcaaggtgcgcctgtcgatgaaagtcgtcgatcaggaaactggt
gaagaagtgtcaaaagaagaagcggcagaaggttaa
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