Sulfitobacter indolifex: DSM14862_00817
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Entry
DSM14862_00817 CDS
T08028
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sinl
Sulfitobacter indolifex
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinl03032
]
DSM14862_00817 (topA)
03400 DNA repair and recombination proteins [BR:
sinl03400
]
DSM14862_00817 (topA)
Enzymes [BR:
sinl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DSM14862_00817 (topA)
DNA replication proteins [BR:
sinl03032
]
Prokaryotic type
DNA Topoisomerases
DSM14862_00817 (topA)
DNA repair and recombination proteins [BR:
sinl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DSM14862_00817 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UOA18059
LinkDB
All DBs
Position
cDSM14862:complement(822987..825644)
Genome browser
AA seq
885 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGDNYTVLASYGHVRDLPPKDGSVDTDADFDMKWEVASDSKK
HVKAIADALAKDNALILATDPDREGEAISWHLQEALTKRKSIKKDTPVSRVVFNQITKKA
VTEAMENPRQVDMPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVTLRLIVE
REMEIEAFRAREYWSVKALLATPRGQEFETRLVSLAGKKLDRFDLADATQAEMAVQAITS
RALKVMNVEAKPASRNPSAPFMTSTLQQEASRKFSMGARQTMSTAQRLYEAGHITYMRTD
GIDMAPEAVTMARDAIADRFGADYVPKEPRIYKNKAKNAQEAHECIRPTDMTKDAKALKL
DADQAKLYDLIWKRTLACQMESARLERTTVEVGSEDGQVGLRANGQVVLFDGFLRVYEEG
RDDVVDEDDKRLPQINNGDAMDKRSVTPEQHFTQPPPRYTEATLVKRMEELGIGRPSTYA
SIVTTIQDREYVRKDGNRLIPEDKGRLVTAFLENYFRRYVGYDFTADLEDQLDKVSAGDA
AYKEVLRRFWRDFSAAIAETSELRITEVLEKINEVLEPHLFPPTEDGSDPRLCPNCEIGR
LSMRTARSGGAFIGCSNYPECRYTRPFGPPDPEAEASAIPPDGKLLGEDQGDEIRVFKGR
FGPYVQRGPVTEENKKPPRQSIPKDWPAEEVTLEQGVMLLSLPRQIGPHPEDGVMVWSNI
GRYGPYIKHAESTSDRGGTNANLEGIDEVFTVGMNRAVQLLAEKVASRGGRGKAAKPIRE
MGEHPDMGGAVNIMEGKYGPYVKWEKVNATIPKEVEPADLTMERAVELIEEKLAKSPAKR
KAATKKKAPAKKPAAKTATKKPAAKKTAAKKPAAKKPAAKKTDGA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgtcgttgtcgaatcccccgccaaggctaaaacgatcaacaaatatttgggc
gataattataccgtcctcgcctcctatggccacgtccgagacctgccgcccaaggatgga
tcagtcgacaccgacgctgatttcgacatgaagtgggaagtcgccagcgacagtaagaaa
cacgtcaaggcgatcgcggatgcgctggccaaagacaacgcattgatcctcgcgactgac
cccgaccgcgaaggcgaggcgatcagctggcacctgcaagaggcgctgaccaagcgcaaa
tcgatcaagaaagacacgcctgtcagccgcgtggtgtttaaccagatcaccaagaaggcc
gtgaccgaggcgatggaaaacccgcgccaagtcgatatgccactggttgaggcctatctc
gcccgccgggctttggactatctggtgggttttaacctgtcgcccgttctctggcgcaaa
cttcccggcgcgaaatcggcaggccgggtgcagtcggttaccctgcgcctgatcgttgag
cgtgagatggaaatcgaagctttccgcgcccgcgagtattggtcggtcaaggcgctgctc
gccacgccgcgcggtcaggagttcgagacgcgtcttgtttctcttgcgggcaaaaagctg
gatcgtttcgacttggccgatgccacacaggccgagatggcggtgcaggcgatcaccagc
cgtgcgctgaaggtcatgaacgtcgaggccaaaccggccagccgcaacccatcagcgccc
ttcatgacgtcgaccctgcagcaagaagccagccggaagttttcgatgggcgcacggcag
acgatgtcaacggcgcagcgcctttatgaagccggtcacatcacctacatgcggacagac
ggcatcgacatggcccccgaagcggtgacaatggcgcgcgatgcgatcgccgaccgtttt
ggcgcggactatgtgccgaaagagccgcgcatctataaaaacaaggccaagaacgcccaa
gaagcgcacgaatgtatccgcccgacggatatgacgaaagacgccaaagcgctgaaactc
gacgccgatcaggcgaagctttacgatctgatctggaaacgcaccctcgcctgtcagatg
gaaagcgcgcgccttgagcgcaccacggttgaagtcgggagcgaagatggtcaggtcggc
ctgcgtgcaaatggtcaggtcgtgctgtttgacggcttcctgcgcgtttatgaagaaggc
cgcgatgatgtggtcgacgaagacgacaagcgcctgccccagatcaacaatggcgatgcg
atggacaagcgcagcgtcacgccagagcagcacttcacccagccaccgccgcgctatacc
gaagcgacattggtcaaacggatggaagagcttggcatcggccgcccctcgacttacgcc
agcatcgtcaccacgattcaagaccgcgaatatgttcgcaaggatggcaaccgcctgatc
ccagaagataaaggccgtttggtcaccgccttccttgagaactacttccgccgctacgtt
gggtatgatttcaccgccgatctggaagaccagcttgataaggtcagcgcgggcgatgcg
gcttataaagaagtgctgcgtcgcttctggcgcgacttttcggcggcgattgccgaaaca
tccgagctgcggatcacggaagttctggaaaagatcaacgaggtgctggaaccgcacctc
ttcccacccacagaagacggcagcgatccgcgcctttgcccgaattgcgagattggacgc
ctgtcgatgcgtaccgcgcggtcgggcggggcatttatcggctgctcaaactaccccgaa
tgccgctacacccgccccttcggcccgccggacccagaggctgaagcctcggccattccg
cctgatgggaagctgttgggcgaagatcagggggacgaaatccgcgtcttcaagggccgt
tttggcccctatgtacagcgcggcccggtgaccgaagagaacaaaaaacctccgcgccaa
tcgatcccaaaggattggcccgccgaagaagtgacgctggaacaaggtgttatgctgctg
tccctgccccgccagatcggcccgcacccagaagatggcgtgatggtctggtcgaacatc
gggcgttatgggccgtatatcaaacacgccgagagcacctcggaccggggcggcaccaat
gccaaccttgaagggatcgacgaggtctttaccgtgggcatgaaccgcgcggtgcaactg
ctggccgaaaaagtcgccagccgtggcggccgtggcaaggccgcaaaaccgatccgtgag
atgggtgaacacccagatatgggcggcgcggtgaatatcatggaaggcaaatatgggccg
tatgtgaagtgggaaaaggtcaacgcgacgatcccgaaagaggttgagccggcggacctg
accatggaacgcgcggtggaattgatcgaggaaaagctcgctaaatctccggccaagcgc
aaggcggcaaccaagaagaaggcgcctgcaaagaagcctgcggccaagaccgccaccaag
aaacccgcagcgaaaaaaacggctgctaagaagccggccgcaaagaaaccggcggctaaa
aagaccgacggcgcgtaa
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