Sulfitobacter indolifex: DSM14862_01084
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Entry
DSM14862_01084 CDS
T08028
Symbol
uvrD_1
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03420
Nucleotide excision repair
sinl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM14862_01084 (uvrD_1)
03430 Mismatch repair
DSM14862_01084 (uvrD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinl03400
]
DSM14862_01084 (uvrD_1)
Enzymes [BR:
sinl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM14862_01084 (uvrD_1)
DNA repair and recombination proteins [BR:
sinl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM14862_01084 (uvrD_1)
MMR (mismatch excision repair)
Other MMR factors
DSM14862_01084 (uvrD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UOA18319
LinkDB
All DBs
Position
cDSM14862:1096833..1099250
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AA seq
805 aa
AA seq
DB search
MSDFDEMDAFEGASLSARAMAARPQPYLEGLNPAQRAAVETMDGPVLMLAGAGTGKTRAL
TARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGQMLGQQVEGMPWLGTFHAICVKLL
RRHAELVGLKSNFTILDTDDQLRLLKQLVAAEGIDDKRWPARMLAGLIDGWKNRALTPDK
VPTADAGAYNHRGPEIYAQYQRRLIELNATDFGDLLLHMVTIFQAHPDVLAQYQRWFKYI
LVDEYQDTNVAQYLWLRLLAQGHKNICCVGDDDQSIYGWRGAEVGNILRFETDFPGAHVV
KLEQNYRSTPHILAAASGVIAGNEGRLGKTLWTEETEGEKVRLIGHWDGEEEARWIGDEI
ESAQRGTRGLDPFSLDDMAILVRASHQMRAFEDRFLTIGLPYKVIGGPRFYERLEIRDAM
AYFRVVTSPDDDLAFERIVNTPKRGLGDKAQQKIQRTARDHGVNLVEGARILLAHDGIGG
KGGAQLRLLVEGIDRWSSMLHGPRIEISEDDSVLDDGAVPLRVDYGPPEVSHVELAEMIL
DESGYTGMWQNDKTPEAPGRLENLKELVKALEGFENLQGFLEHVSLIMDNEQEGDGEKVS
IMTLHAAKGLEFPMVFLPGWEDGLFPSQRSMDESGIKGLEEERRLAYVGITRAEQICTIS
FAANRRVFGQWQNAMPSRFIDELPEEHVEVLTPPGLYGGGFGAAMPQSELHDRAANANVY
NSPGWKRLQSRSGARGTSQPRESRNVTIDMQAVAAFEMGERVFHDKFGYGEVIGIEGDKM
EVAFEKAGTKKVVSRFLTGGQDVPF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttgacgaaatggatgcctttgaaggcgcatcattgtccgcccgcgccatg
gccgcgcgcccgcagccttatctggaggggttgaaccccgcccagcgtgccgcggttgag
acgatggacggaccggtgctgatgcttgcaggggcaggcaccggcaagacgcgggcactt
acggcgcgaatcgtgcatctgctcaacaccgggcgggcgcggccgaatgaggttttggcg
gtcactttcaccaacaaagccgcgcgggagatgaaaaaccgtgtgggtcagatgctgggc
cagcaggtggaggggatgccatggcttggcactttccatgcgatctgcgtcaaactgctc
cggcgccatgcggaattggtggggcttaagagtaattttaccattctagacacagatgat
cagttgcgactgctgaaacaattggtggcggctgaggggatagatgacaaacgctggccg
gcgcggatgttggcagggcttattgatggctggaagaatagggcgctgacgcccgacaag
gtgccaacggcggatgctggggcttataaccaccgtggacccgagatttacgcgcaatat
caacgccgtttgattgagttgaacgcgaccgactttggcgatctgctgctgcatatggta
acgatttttcaggcgcatccggatgttctggcgcagtatcagcgctggtttaagtacatt
ctggtggacgaatatcaagataccaacgtcgcccaatacctgtggttgcggcttttggcg
caggggcataagaacatttgctgcgtcggcgatgacgaccagtcgatttacggttggcgc
ggggccgaagtgggcaatatcctccggttcgaaacggatttccccggtgcacatgtggtc
aagttggagcagaattaccgctcgaccccgcatattttggcggctgcctcgggcgtgatc
gccggaaatgaagggcgcttgggtaagacgctatggaccgaagagactgagggcgaaaag
gtccgccttatcggccattgggatggcgaggaagaggcgcgctggatcggggatgagatc
gaatctgcacagcgcggcacgcgggggctcgatccattctcactcgacgatatggcgata
ctggtccgggcgagccatcagatgcgggcgtttgaagatcgttttttaaccattgggctg
ccttataaggtgatcggcggcccgcgattctatgagcggttggaaattcgcgatgccatg
gcctatttccgcgtcgtcaccagccctgacgatgatttggcgtttgagcgcatcgtaaac
acaccgaagcgtggtcttggcgacaaggcccagcaaaaaatccagcgcaccgcgcgcgat
catggggtgaaccttgtcgaaggggcgcgaatccttttggcgcatgacgggatcggtggc
aaaggaggggcccagttgcggctgctggtcgaaggaattgaccgctggtcatcgatgttg
catggccctcggatcgagatcagcgaagatgacagcgtgcttgatgatggcgcggtgccg
ctgcgggtcgattacgggccacccgaagtttctcatgtcgaactggccgaaatgattctc
gacgaaagcggctatactggcatgtggcaaaacgacaaaacgcccgaagcgccgggacgg
ttggagaatctcaaggaactggtgaaggcattagaggggttcgagaatttgcagggtttc
ctcgaacacgtcagcttgatcatggacaacgagcaggaaggcgacggcgagaaggtgtcg
atcatgacccttcacgcggccaaagggcttgaatttccaatggtgtttttgccaggctgg
gaagatgggcttttcccctcgcagcggtcgatggacgaaagtgggatcaaggggctcgag
gaggaacggcggcttgcttatgtgggaattacccgggccgagcaaatctgcacgatctct
tttgccgcgaaccgccgcgtctttggacagtggcagaatgcgatgccatcgcggtttatc
gatgagctgcccgaggagcatgttgaggtgttaacccccccaggactttacggtgggggc
tttggcgcggcgatgccgcagtctgagctgcatgaccgcgcggccaatgcgaatgtctat
aactcgccggggtggaaacgattgcaatcgcgcagtggggcgcggggcaccagtcagccc
cgagaaagccgcaatgtcacgatcgacatgcaggcggtcgccgcttttgagatgggtgaa
cgcgtttttcacgataaattcggctacggcgaagtgatcggcatcgaaggcgataaaatg
gaagtcgcttttgagaaggccgggaccaagaaggtcgtctcgcggtttttgaccggtggg
caagacgtgccattctaa
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