KEGG   Sulfitobacter indolifex: DSM14862_01400
Entry
DSM14862_01400    CDS       T08028                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
sinl  Sulfitobacter indolifex
Pathway
sinl02024  Quorum sensing
sinl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sinl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSM14862_01400 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DSM14862_01400 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sinl03019]
    DSM14862_01400 (hfq)
   03036 Chromosome and associated proteins [BR:sinl03036]
    DSM14862_01400 (hfq)
Messenger RNA biogenesis [BR:sinl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DSM14862_01400 (hfq)
Chromosome and associated proteins [BR:sinl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DSM14862_01400 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: UOA18628
LinkDB
Position
cDSM14862:1417790..1418029
AA seq 79 aa
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPISLYEGEDAS
NT seq 240 nt   +upstreamnt  +downstreamnt
atggcgtcagacagacagaaccttcaggatgcgttcctaaaccacgtccgcaagaccaag
gtcccggtaaccatttttctgatcaatggggttaagctgcaaggcgtcattacctggttt
gataatttttgcgttctgctgcgccgtgatggccaatcgcaacttgtctacaagcatgcg
atttcgaccattatgccaagccagccgatcagcctttatgagggcgaagacgcttcttga

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