Sulfitobacter indolifex: DSM14862_01580
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Entry
DSM14862_01580 CDS
T08028
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM14862_01580 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinl03019
]
DSM14862_01580 (rne)
03009 Ribosome biogenesis [BR:
sinl03009
]
DSM14862_01580 (rne)
Enzymes [BR:
sinl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DSM14862_01580 (rne)
Messenger RNA biogenesis [BR:
sinl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSM14862_01580 (rne)
Ribosome biogenesis [BR:
sinl03009
]
Prokaryotic type
rRNA processing factors
DSM14862_01580 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UOA18800
LinkDB
All DBs
Position
cDSM14862:complement(1599497..1602322)
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AA seq
941 aa
AA seq
DB search
MLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPVADRQALLEEERAYAEAQAAKDEDDEKPKRTRSRSRGRSKSQ
AAETNSDDAVATSEVSDESSDQIAGMETVDLDSEEGSSPMERVAETPVEEPEGNGDDGDA
FEATDATENNANEANGSDATAKDDSIESVADEDDSEDIRPVRKPRPRRYKIQEVIKVRQI
LLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIATEI
EVPKGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGDLIKRSI
RDLYNREIDEIHVEGERGYRIAKDFMKMIMPSHAKNVKLYNESLPLFARYQVESYLSGMF
NPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLRDL
AGLIVIDFIDMDERKNNAAVEKMMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEA
TTQPCHACHGTGLVRSDDNLALSIIRQIEEEGTRRRSREVLVRAPVGIANFLMNQKREHI
AHIEMRYGMSVRIEGDPSLVSPDFHIEKFKTATRTVPPVSDHVVSVDTSLMDQIDEDESA
AEAEAEEAPAAQDPSQSEDGNGNGNANGNGNGEEGDGEGKSKRRRRRRRSRGGRGRNGNG
EQQNGAEDQNDGQQQDAAQSDDAEKSQPVEAETPQSEGETAPAAEEKPKPKGRSRSRKPK
AGIAPEAEPAPEALAAAEGETPKVAAEAEAEETSKPKARRSRGSRAKKPAADAPAEGSVT
VDPVTTEDAAEPAPKRKRRSRAKAKPVEPVAEATPDAAATPDAMADVLPTEAPIAEPAPE
TAPIAQEPKPEPTPEPAAEQVQEQPAEKPKPKRRGWWSLGS
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcgatgccacccacgccgaggaaactcgcgttgtggtcgtggatggaaacaag
gtcgaggaattcgattttgaatcagaaaacaaacgccagcttgccggcaatatctatcta
gccaaggttacgcgcgttgagccgtcccttcaggcggcctttgtggattatggcggcaac
cgccatggattcctcgcattctcggaaattcaccccgattattaccagattcccgtggct
gaccgacaggcgctgctggaagaagagcgcgcttatgctgaagcacaagccgccaaggat
gaggatgacgaaaagcccaaacgcacccgctctcgttcgcgtggccggtccaaaagccaa
gccgctgagaccaacagtgatgatgcagtagccacgtccgaggtttccgacgaaagcagc
gaccagatcgccgggatggaaacggttgacctcgacagcgaagagggcagttcgcccatg
gagcgtgtcgctgaaacgcctgtggaagagcccgaaggcaatggcgatgatggcgacgcg
ttcgaagcaaccgacgccacagaaaataacgccaacgaggcgaacggcagcgatgccacg
gccaaggacgattccatcgaatccgtggctgacgaagacgacagcgaagacattcgcccc
gtgcgcaagccgcgcccgcgtcggtacaaaatccaagaagtgattaaggtgcgccagatc
cttctagtgcaggtcgtcaaagaagagcgtggcaacaaaggtgccgcactcacgacttac
ctcagcctggctggccgctactgtgtcttgatgcccaacaccgcacgtggtggtggcatc
agccgcaagatcaccaatgccgtcgaccgcaagaagcttaaggaaatcgcgaccgaaatc
gaagtgccgaaaggcgcaggcctgatcgtgcggaccgccggtgccaaacgcaccaaggcc
gagatcaagcgcgattacgaatacctccagcgcctctgggagcagatccgcgagctgacg
ctgaagtcgatcgcgcctgcgaaaatctacgaagaaggcgacctgatcaaacgctcgatc
cgcgacctctataaccgcgagattgacgagattcatgtcgagggcgagcgcggctaccgc
atcgccaaggacttcatgaagatgatcatgccgtcccacgccaaaaacgtaaaactctat
aacgagagcctgccgctgttcgcgcgctatcaggtggaaagctacctgtcgggcatgttc
aaccccacggtgcaactgccctcgggcggctacattgtgatcggcgtgaccgaagcgttg
gttgccatcgacgtcaactctggccgggcgaccaaagaaggctcgatcgagcagaccgcg
accaagaccaaccttgaggccgccgccgaggtggcgcgccagttgcgtctgcgtgacctt
gccgggctgatcgtcatcgacttcatcgacatggacgagcggaaaaacaacgccgccgtc
gaaaagatgatgaaagacaaactcaagaccgaccgtgcgcgcatccaagtgggccgcatc
tcgggctttggtctgatggaaatgtcgcgccagcgtctgcgccccggtatgatcgaggcg
accactcagccttgtcatgcctgccacggcaccggtctggtgcgctcggacgataacctc
gcgctgtcgatcatccgccagatcgaagaagagggcacccgccgccgttcgcgcgaagtg
ctggtgcgtgcgcccgtgggcatcgccaacttcttgatgaaccaaaagcgtgaacatatc
gcccatatcgaaatgcgctatggcatgtctgtgcggatcgaaggcgacccatccttggta
agccccgatttccacatcgagaagttcaaaactgctacccgcaccgtgccgcctgtgtcg
gatcacgttgtgtcggtcgacacctccttgatggatcagatcgacgaagacgagagtgca
gcagaggctgaagccgaagaggcacctgccgctcaggaccccagccagtccgaagacggg
aatggtaacggcaacgcaaatggcaatggcaatggtgaagagggcgatggcgagggtaaa
tccaagcgccgccgccgtcgtcgtcgcagccggggtggccgtggccgcaatggcaatggt
gagcagcaaaatggtgccgaggaccagaacgacggtcagcagcaggacgccgcacaatca
gatgacgcggaaaagagccagccggtagaggcggagacgcctcaatccgaaggtgaaacc
gcgcctgccgccgaagaaaagcctaagcccaagggccgtagccggtcgcgcaagcccaag
gccggaatcgcaccagaggccgaaccggcccccgaagcgcttgctgccgccgagggcgaa
acgcccaaggttgccgctgaagctgaggcggaagagacgtccaaacccaaggcacgacgg
agccgtggcagccgggccaaaaaaccagccgccgatgcaccggcagagggcagtgtgaca
gtcgatccggtgaccaccgaagacgctgccgaacccgcaccaaagcgcaagcgccgcagc
cgcgccaaggcgaaaccggtagagccggtcgccgaagcaacgcccgacgcagcagcaacg
cctgacgcaatggccgacgtgctgccgaccgaagcaccgattgcagagccggcccctgaa
acggcgccgatcgcgcaagagccaaagccagagcccacacctgagcccgcagccgaacag
gtgcaggaacagcccgctgagaagcccaagcccaaacgtcggggctggtggtcgctgggc
agctaa
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