Sulfitobacter indolifex: DSM14862_02191
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Entry
DSM14862_02191 CDS
T08028
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DSM14862_02191 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinl03021
]
DSM14862_02191 (rpoD)
Transcription machinery [BR:
sinl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DSM14862_02191 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
FTCD_C
Motif
Other DBs
NCBI-ProteinID:
UOA19392
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All DBs
Position
cDSM14862:complement(2219587..2221569)
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AA seq
660 aa
AA seq
DB search
MAAKDTNDDAKTDDSDSGHSLDMSQAAVKKMIGEAREKGYITYDQLNTVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEEAEEEEAKGSTEVATTESNRDVALSSGTSEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWRDELLSEDILLRDV
IDLEATFGTQMGDEEETTPVVAPTATSDTKSDEGKTELDADGHPISSDDDDDEDEQANMS
LAAMEEALKPQVLEALDIIADDYEKLSAMQDSRISATLNEDGSFTKDEEAMYQKLRSEIV
LLVNELHLHNNRIEALIDQLYGINRRIMQIDSAMVKLADQARINRKEFVDNYRGYELDPN
WMERMAEKSGRGWQMFIERSSEKVDELRNDMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLSSLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaagatacaaatgacgacgcaaagaccgacgattccgattcaggccactcg
ctcgacatgagccaggccgccgtcaagaagatgatcggcgaggcgcgcgagaagggctat
attacctacgatcagctcaataccgtgctgccgccggatcaggtcagctcggagcagatc
gaagatgtgatgtcgatgctctcggaaatgggcatcaacatcattgaggatgaggaagcc
gaagaggaagaggccaagggctctaccgaagtcgcgaccaccgaatccaatcgcgatgtc
gcactgtcctcgggcacgtctgagaaacttgaccgcaccgatgacccggtgcgcatgtac
ctgcgcgagatgggcagtgttgaactgctcagccgcgagggcgagatcgccattgcgaaa
cgcatcgaggcgggccgcaacacgatgatcgccgggctgtgcgaaagcccgctgacattt
caagcgatcaccatctggcgcgacgaacttctgtccgaagacattctgctgcgtgacgtg
atcgaccttgaggcgacattcggcacgcagatgggcgatgaggaggagaccacccccgtg
gtcgccccgacagccaccagcgacaccaagtctgacgagggcaaaaccgagctggatgcc
gacggccacccaatctcgtccgatgatgacgacgatgaggacgaacaggccaacatgagc
ttggctgccatggaagaggcgctgaaacctcaggtgctcgaagcgctcgatatcatcgcg
gatgactacgaaaaactcagcgcgatgcaagacagccggatctccgccacgctgaacgaa
gacggctccttcaccaaagatgaagaagcgatgtaccaaaagctgcggtccgagatcgtg
ctgctggtgaacgagctacacctgcacaacaaccgtatcgaagccctgattgaccagctg
tacggcatcaaccgccgcatcatgcagatcgacagcgccatggtgaagcttgccgaccaa
gcgcgcatcaaccgcaaggaattcgtcgacaactaccgcggctatgagcttgatcccaat
tggatggagcggatggccgagaaatccggtcgtggctggcagatgttcatcgaacgctcg
tccgagaaagtggatgagctgcgcaacgacatggcgcaggttggtcagtacgttggcctt
gatatctctgaattccgccgcatcgtgcagcaggttcagaagggcgaaaaagaagcccgt
caggccaagaaagagatggtcgaagcgaacctgcgtctcgtcatctccatcgccaaaaag
tacacgaaccgtggtctgcaattccttgatcttattcaagaaggcaacatcggcttgatg
aaggccgtggataagttcgaataccgtcgcggctacaaattctcgacctatgcgacctgg
tggatccgtcaggcgatcacccgctcgatcgccgatcaggcgcgcaccatccgtattccg
gtgcacatgattgagacgatcaataagctggtccgcaccggtcgccagatgttgcacgag
attggccgtgagccaacgcccgaggaactggccgagaagctgcaaatgccgctcgaaaag
gtccgcaaggtgatgaagattgccaaggagccgatcagcctcgagacgccaatcggcgac
gaggaagacagccaacttggcgacttcatcgaagacaagaacgcagtgctgccgctggat
tccgccattcaggagaacctgaaggaaaccacaacccgcgtgctgtcgtcgctcaccccg
cgtgaggaacgtgtcctgcggatgcgttttggcatcggcatgaacactgaccatacgctt
gaagaggtcggccagcagttctcggtcacccgtgaacgtattcgtcagatcgaagccaaa
gcgttgcgcaagctcaagcacccgagccgctcgcgcaagctgcgcagcttcttggatcag
taa
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