Sulfitobacter indolifex: DSM14862_03192
Help
Entry
DSM14862_03192 CDS
T08028
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sinl
Sulfitobacter indolifex
Pathway
sinl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM14862_03192 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinl03019
]
DSM14862_03192 (rnr)
03016 Transfer RNA biogenesis [BR:
sinl03016
]
DSM14862_03192 (rnr)
Enzymes [BR:
sinl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSM14862_03192 (rnr)
Messenger RNA biogenesis [BR:
sinl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSM14862_03192 (rnr)
Transfer RNA biogenesis [BR:
sinl03016
]
Prokaryotic type
tRNA degradation factors
DSM14862_03192 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR
Motif
Other DBs
NCBI-ProteinID:
UOA20361
LinkDB
All DBs
Position
cDSM14862:complement(3206271..3208532)
Genome browser
AA seq
753 aa
AA seq
DB search
MSKIPSKSEILDWIEQNPTLTAKRDIAKAFGIKGAARIDLKRVLKELEAEGHLEKRQRSY
QDPDRLPPVSVLLVTGPDKDGDLFAKPMEWHGEGAEPVVLLIPRDSDPALGEGDRILARL
TLVKGEEHHYEARLIRRIGSNPKKVLGIFRKAAEGGRIVPIDKGADREWRVGADHTHGAK
DGELVEAEQAGPKGRMGSPRARIVERLGDPSEPRAVSLIAIHQHGIPDDFPDDVVAQADA
AKPQGLKGREDLRDLPLVTIDPSDARDHDDACYAHADEDPKNEGGHVVWVAIADVAAYVT
PGSALDIEARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMVLDAKGNKLS
HTFHRGLMRSPASLHYEEVQDAIDGNPNDRTGPLLEPVLKPLYAAYGALKLARAERQPLE
LDLPERRIELGDDGKVKSVNFRERLDAHKLIEEFMVLANVAAAETLLKKKTPLLFRIHEE
PSPEKLESLRETAQAAGLTLAKGQVLMTSHLNRLLDQAAGTDDAELINISTLRSLTQAYY
GPAHIGHFGLALRSYAHFTSPIRRYADLIVHRALITAHGWGKDGLTPEEIEGLEQTGAHI
SDTERRSMVAERDTTDRYLAAFLSERVGNEFTGRISGIARFGAFVKLDETGADGLLPMRS
LGREYFHHDPETQTLMGSDTGMIIGIGQRVTVRLAEAVPVTGGISLELLEIEDQMVKQGG
GRRSPAGRNPRGKAVKAKRKKDKIKRKVTRTRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagatacctagcaaatccgagatcctcgactggatcgaacaaaaccccacgctg
accgcgaaacgcgacatcgccaaagcctttggcatcaaaggtgcggcgcggatcgaccta
aagcgcgtgctgaaagaactggaggccgagggccatctggagaagcgccagcgcagctat
caggacccagaccgccttccgccggtgtcagttctgctggtcaccgggccggataaggat
ggcgatctttttgccaagccgatggaatggcacggcgagggggcagagcctgtcgttttg
ctgatcccgcgcgacagcgacccggcccttggggagggcgaccggattttggcgcggttg
acgctggtgaaaggcgaagagcaccactatgaggcgcggctgatccgccgcatcggcagc
aatccgaaaaaggtgctgggcatcttccgcaaggctgccgagggcgggcgcattgtcccg
atcgacaagggcgcagaccgtgaatggcgcgtcggggccgatcacacccacggggccaaa
gacggtgaattggtcgaggccgagcaggccgggccaaaggggcgcatgggttccccccgt
gcgcgcatcgttgaacggttgggagacccgtcagagccgcgcgcggtgtcgcttatcgcg
attcaccagcacggcattcccgatgatttccccgatgatgtggtggcccaagctgacgcc
gccaaaccgcagggccttaagggccgcgaagacctgcgcgatctgccgctggtcaccatc
gacccgtccgacgcgcgtgaccatgatgacgcctgctatgcccatgccgacgaagacccc
aaaaacgagggcggccatgttgtctgggtcgccatcgcggatgtcgctgcctatgtgacc
cccggttcggcgttggacattgaggcacgcaaacgcggcaactcgacctattttccggac
cgcgttgtgccgatgttgccggaccgcctttcgggtgatctgtgctctctacacgaaggg
gtgccgcgcgcctgtatcgccgtgcggatggtgctggacgccaagggcaataaacttagc
catacattccaccgcggtctgatgcgctcgcccgcgtccttgcattacgaagaggtgcag
gacgccatcgacggcaatcccaatgaccgcaccgggccgctgttggagcctgtgttaaag
ccgctctacgccgcctacggcgcgctgaaactggcgcgggcggaacgtcagccgctggag
ctggacttgcccgaacgccgcatcgaactgggcgatgacggcaaggtaaagtcggtgaac
ttccgcgaacggctcgacgcgcataaactgatcgaagagttcatggttctggccaatgtc
gccgctgccgagacgctattgaaaaagaagaccccgctgctgttccgcatccacgaagaa
ccctcgccggagaagctggagagcttgcgcgaaacggcgcaggccgccgggctgacgctg
gccaaggggcaggtgctgatgacatcgcatctgaaccggctgctggatcaggcggcgggc
accgacgatgccgaactgatcaacatcagcactctacgctcgttgacacaggcctattac
ggtcctgcgcacatcgggcactttggcctcgcactgcggtcctacgcgcatttcacctcg
ccgatccgccgctatgcggacctgatcgtgcaccgcgcgctgatcaccgcgcatggctgg
ggcaaagacggtctgaccccggaagagatcgaaggtctggaacagaccggcgcgcatatt
tcggacaccgagcggcgctcgatggtggcagagcgcgacacgaccgaccgctaccttgcg
gccttcctgtcagagcgcgtgggcaatgagttcaccggtcgcatcagcggcattgcgcgt
ttcggcgctttcgtgaaactggacgagaccggcgcggatggtttattgccgatgcggtca
ttggggcgtgagtatttccatcacgatcctgaaacacaaaccctaatggggtcggacacc
ggcatgatcatcggcattggccagcgggtcaccgtgcggctggccgaagcggtgccggtg
accgggggcatctcgttggaattgcttgagatcgaagaccagatggtgaagcagggcggc
ggtcgtcgcagtccggctggccgcaacccgcgcggcaaggctgtcaaagccaagcgcaag
aaggacaagatcaagcgcaaagtgacccgcacccgccgctga
DBGET
integrated database retrieval system
