Streptomyces incarnatus: ABB07_03900
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Entry
ABB07_03900 CDS
T09785
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sinn
Streptomyces incarnatus
Pathway
sinn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sinn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABB07_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinn03400
]
ABB07_03900
Enzymes [BR:
sinn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ABB07_03900
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABB07_03900
DNA repair and recombination proteins [BR:
sinn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABB07_03900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_ribbon_RRN7
Zn_ribbon_8
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AKJ09196
LinkDB
All DBs
Position
complement(904265..905128)
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AA seq
287 aa
AA seq
DB search
MPELPEVEALKDFLTEHLVGHRVARVLPVAVSVLKTYDPPVTAFEGAQVTAVHRHGKFLD
LAADSGLHLVTHLARAGWLQWKDRLPDGPPKPGRGPLALRVALETGEGFDLTEAGTQKRL
AVYVVRDPRQVEGIARLGPDPLAADFDEDRLADLLRDERRQLKGALRDQSLIAGVGNAYS
DEILHAARMSPFKLAASLTPEETHRLYEALRSTLTEAVDRSRGLAAGRLKAEKKSGLRVH
GRTGEPCPVCGDTIREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaggtagaagcgctgaaggacttcctcaccgagcacctggtcggc
caccgggtggcccgcgtgctgccggtcgccgtcagcgtcctgaagacgtacgaccccccg
gtcaccgccttcgagggcgcgcaggtgaccgccgtgcaccggcacggcaagttcctggac
ctggcggccgacagcgggctgcacctggtgacccacctggcccgggccggctggctgcag
tggaaggaccggctgccggacggcccgcccaagcccggcaggggcccgctcgcgctgcgc
gtggcgctggagaccggcgagggcttcgacctcaccgaggccggcacccagaaacgcctc
gcggtgtacgtcgtccgcgatccgcggcaggtcgagggcatcgcccggctcggtccggac
ccgctcgccgccgacttcgacgaggaccgcctcgccgacctgctcagggacgagagacgg
cagctcaagggcgccctgcgcgaccagtccctgatcgccggcgtcggcaacgcctacagc
gacgagatcctgcacgccgcgcggatgtccccgttcaagctcgccgcgtccctgaccccg
gaggagacccaccggctctacgaggcgctgcgctcgacgctcaccgaggcggtggaccgc
tcccggggcctggccgccgggcggctgaaggccgagaagaagagcggcctgcgcgtccac
ggccggaccggcgagccctgcccggtgtgcggagacaccatccgcgaggtctccttcagc
gactcctcgctgcagtactgccccacctgccagacgggcggcaagcccctggcggaccgc
agactgtcccggctgctgaagtag
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