Streptomyces incarnatus: ABB07_12595
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Entry
ABB07_12595 CDS
T09785
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sinn
Streptomyces incarnatus
Pathway
sinn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sinn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ABB07_12595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinn03400
]
ABB07_12595
Enzymes [BR:
sinn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ABB07_12595
DNA repair and recombination proteins [BR:
sinn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ABB07_12595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AKJ10821
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All DBs
Position
2903592..2904479
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AA seq
295 aa
AA seq
DB search
MTPITEVEGRRVALSNLEKVLYPETGFTKAELVHYYATSADVLLPHLRERAVSFLRYPDG
PEGQLFFTKNVPPGTPEWVTTAEVPRSSADSPARMVVVQDLASLVWAANLVTEFHTHQWL
VQHPDEADRLVFDLDPGAPATVVHCCQVALWLRERLAADGIEAYPKTAGSKGLHLLASVR
GSSSEETSEYAKALAVEAERAMPRLVVHRMTKSLRPGKVFVDWSQNAGRKTTATPYTLRA
RRAPLVSAPVTWEEVADCRNPAQLEFQAGDIAPRLQDLGDLMAGLLDPDAATPLP
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctatcacagaggtggaggggcggcgggtcgcgctcagcaacctggagaaggtg
ctgtatccggagaccggcttcaccaaggcggagctggtgcactactacgcgaccagcgcc
gatgtgctgttgccgcacctgcgcgagcgggccgtgtccttcctgcgctatccggacgga
ccggaggggcagctgttcttcaccaagaacgttccgcccggtacgcccgagtgggtcacc
accgccgaggtgccgcggtcctcggcggacagtccggcccggatggtggtggtgcaggat
ctggccagcctggtctgggcggcgaatctcgtcaccgagttccatacgcaccagtggctg
gtgcagcacccggacgaggccgaccggctggtcttcgacctcgacccgggcgcgcccgcg
accgtcgtgcactgctgccaggtggccctgtggctgcgcgagcggctcgcggcggacggc
atcgaggcgtacccgaagacggccgggtcgaaggggctgcatctgctggcctccgtgcgg
ggctcgtcgtccgaggagaccagcgagtacgcgaaggcgctcgccgtggaggccgagcgg
gcgatgccccggctggtggtgcaccggatgacgaagagcctcagaccggggaaggtgttc
gtcgactggagccagaacgcgggccgcaagaccacggccacgccgtacacgctgcgcgcc
cgccgggccccgctggtgtccgcgccggtgacctgggaggaggtcgccgactgccgcaac
cccgctcagctggagttccaggcgggcgacatcgcgccgcggctgcaggacctcggcgat
ctgatggccggcctcctggacccggacgcggccacgccgctcccgtga
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