Streptomyces incarnatus: ABB07_18885
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Entry
ABB07_18885 CDS
T09785
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sinn
Streptomyces incarnatus
Pathway
sinn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sinn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABB07_18885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinn03400
]
ABB07_18885
Enzymes [BR:
sinn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
ABB07_18885
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABB07_18885
DNA repair and recombination proteins [BR:
sinn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABB07_18885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_IS1595
Auto_anti-p27
Ribosomal_S13
Zn_ribbon_8
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AKJ12026
LinkDB
All DBs
Position
4284289..4285077
Genome browser
AA seq
262 aa
AA seq
DB search
MPELPDVEGFRRVLVSCAKGRAIRRVDVRDTGVLHGVSVRRLRDALEGRRFTEPERHGKW
LLAHTGGPTLLLHFGMTGRLLCARPGDTVEAHDRVLFDLSGDRQLRYRDQRKLQGIWLAD
DDSGVARLLERQGPDALAVDGADFEAALRARRGHLKTALTDQSVLAGLGNLLADEVLWRA
GLNPRTRAGELTQSERRRLYTHMRRTLRSAVTAGCVPPRAGWLTGHRDDPDPVCPRCHTH
LRRSRLAGRGTVWCPRCQPYEA
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgagctgccggatgtcgagggtttccgccgggtgctcgtgtcctgtgcgaagggc
agggccatccgccgcgtcgacgtgcgcgacacgggcgtcctgcacggggtgagcgtacga
cggctgcgcgacgccctggagggacggcggttcaccgagccggagcggcacggcaagtgg
ctgctcgcccacaccggcggtcccacgctcctgctgcacttcggcatgaccggacggctg
ctctgtgcccgtcccggcgacaccgtcgaggcccatgaccgcgtcctgttcgacctgagt
ggcgaccgtcagctccgctaccgcgaccagcgcaagctccagggcatctggctggccgac
gacgactccggtgtcgcgcggctgctggagcgtcagggtcccgacgcgctggcagtggac
ggtgccgacttcgaggccgcgctccgcgcccgccgcggtcacctcaagaccgcgctgacc
gaccagtccgtcctggccggcctcggcaatctgctcgccgacgaggtcctgtggcgtgcc
gggctgaaccctcgtacccgggcgggcgagttgacgcagagcgaacgccggcgcctgtac
acccacatgcggcgcacgctgcgttccgcggtcaccgccggctgtgtcccaccgcgcgcc
gggtggctcaccggccaccgcgacgaccccgacccggtctgcccccgctgccacacccac
ctgaggcgctcccggctggcgggccggggcacggtgtggtgcccgaggtgtcagccgtac
gaggcatga
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integrated database retrieval system
