Streptomyces incarnatus: ABB07_34005
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Entry
ABB07_34005 CDS
T09785
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sinn
Streptomyces incarnatus
Brite
KEGG Orthology (KO) [BR:
sinn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sinn03016
]
ABB07_34005
Enzymes [BR:
sinn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABB07_34005
Transfer RNA biogenesis [BR:
sinn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABB07_34005
Prokaryotic type
tRNA splicing ligases
ABB07_34005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKJ14892
UniProt:
A0ABM5TUR1
LinkDB
All DBs
Position
7590713..7592125
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AA seq
470 aa
AA seq
DB search
MELVEERSFRYRIEPHAGMRVPGVVFASRQLLRDAEQSLEQVVHVATLPGIVAASYAMPD
IHWGYGFPIGGVAATDVDAGGVVSPGGVGFDISCGVRLLAADCDGETFRPALTAVMDGLD
RAIPRGAGPGGVWRPDGPGELERLLAEGSRYAVERGHGEERDLLRCEDGGAVADADVSQV
GPRARERGLGQVGSLGSANHFLEVQQVAEVYDGPAAAAFGIRTGQVCVMIHCGSRGLGHQ
ICTDHVRLMDRAMARYGISVPDRQLACTPVDSPEGQAYLGAMAAAANYGRANRQLLSDAA
RGVFRRAAGVRLSLVYDVSHNLAKLETHPVDGERRRLCVHRKGATRAFPPGHPELPDDIS
EFGQPVLIPGTLGTASYVLAGVARGDAFHSTCHGAGRTMSRHQAARSITGSELRTRLRHA
GIAARPKSWRGLTEETPEAYKDVDAVVAASEGAGLCRKVARLVPLGVVKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggagttggtcgaggaacgttccttccgctaccgcatcgaaccgcacgccggcatgcgg
gtgcccggggtcgtgttcgcgtcccggcagctgctgcgggatgccgagcagtccctggag
caggtcgtgcacgtggccaccctgcccggtatcgtcgccgcctcctacgccatgccggac
atccactgggggtacggcttccccatcggcggggtcgccgccaccgacgtcgacgccggc
ggggtggtctccccgggcggtgtcggcttcgacatctcctgcggggtgcggctgctggcc
gccgactgcgacggcgagacgttccggcccgcgctgaccgccgtgatggacggcctcgac
cgggcgatcccacggggcgccgggcccggcggcgtatggcggccggacggccccggcgag
ctggagcggctgctggccgagggctcccgctacgccgtggagcggggtcacggggaggaa
cgcgacctgctgcgctgcgaggacggcggcgcggtcgccgacgccgacgtgagccaggtg
ggcccgcgggcccgggagcggggcctcggccaggtgggcagcctgggctccgccaaccac
ttcctggaggtgcagcaggtggccgaggtgtacgacggcccggccgcggccgccttcggg
atccggaccggccaggtgtgcgtgatgatccactgtggctcacgcgggctggggcaccag
atctgcaccgaccacgtgcggctcatggaccgcgccatggcccgctacggcatctccgtg
cccgaccggcagctcgcctgcacaccggtcgactcccccgagggacaggcctacctcggg
gccatggccgccgccgccaactacggccgggcgaaccggcagttgctctcggacgccgcg
cgaggtgtgttccggcgcgccgccggcgtccggctgtcgctggtgtacgacgtctcccac
aacctcgccaagcttgagacccacccggtggacggcgagcggcgccggctgtgcgtgcac
cgcaagggcgccacccgcgccttcccgcccgggcatcccgaactgcccgatgacatcagc
gagttcgggcagcctgtgctgatccccggcaccctcgggacggcgtcgtacgtgctggcc
ggcgtggcccggggcgacgccttccactccacgtgccacggggccggccgcaccatgagc
cgccaccaggccgcgcgcagcatcaccggcagcgagctgcggacccggctgcggcacgcc
ggcatcgccgcgcgcccgaagtcctggcgcggcctgaccgaggagacaccggaggcgtac
aaggacgtcgacgccgtcgtcgccgcgagcgagggcgcggggctgtgccggaaggtcgcc
cggctggtgccgctcggggtggtgaagggctga
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