Sinorhizobium sp. CCBAU 05631: SS05631_b52900
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Entry
SS05631_b52900 CDS
T05069
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sino
Sinorhizobium sp. CCBAU 05631
Pathway
sino03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sino00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SS05631_b52900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sino03400
]
SS05631_b52900
Enzymes [BR:
sino01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SS05631_b52900
DNA repair and recombination proteins [BR:
sino03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SS05631_b52900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASY59382
UniProt:
A0A249P0X7
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All DBs
Position
pSS05631b:complement(296812..297849)
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AA seq
345 aa
AA seq
DB search
MSRGAKPLLQDDSVAKSKPARPRNPAQPDLPFDPMPERIEPCLALLKPAPPKGPDWVFEV
KWDGYRLAIHIEPKGVRIITRGGHDWTHRFPAIAGAASKLGVGTAILDGEAVVLDEEGRS
DFGALQRSLGGRGGKRSSTVSVCFAFDLLYFDGHDLTGTELSVRRHLLEDFLDGSAGAIQ
LSEEVFGDGAALLEKACSMGLEGIIAKHRDRPYRSGRTGDWLKIKCVQSESFMIVGYEQS
LTARGGLGSLLLAGRKGHDWVYVGSVATGFNTKNAAYLRATLDRLKTKRPAVPLKGKNLI
FAQPTLIAEIEFRGWTHGGSLRHASYKGLREVQDNAAVFDMSERV
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtggtgccaaacctttgctgcaggacgattccgtcgctaagtccaaaccggcc
cggccgcgcaatccggcacagcccgatcttccgttcgacccgatgcccgagcgcatcgag
ccctgcctggcgctcctgaagccggcgccgccgaaaggcccggattgggtgttcgaggtg
aagtgggacggctatcgcctggcaatccatatcgagccgaaaggtgtcaggatcatcact
cgcggcggccacgactggacgcatcgtttcccggcaatcgccggggccgccagcaagctc
ggtgtcgggaccgccatcctcgatggcgaggccgtcgtgctcgatgaggaaggacggtcc
gatttcggggcgctgcagcgctcgctcggcggacgcggcggcaagcgttcatcgacggtg
tcggtgtgttttgctttcgaccttctctatttcgatggccacgacctgacaggaacagaa
ctctccgtgcgccggcatctgctcgaagactttcttgacggctccgccggcgcgatccag
ttgtccgaggaagtgttcggggatggcgccgcacttctcgagaaggcttgctccatgggc
ctcgagggcatcatcgccaagcatcgggatcggccctatcgctccggtcgcaccggcgac
tggttgaagatcaaatgcgtccagagcgaaagcttcatgatcgtcggctacgagcagtcg
ctgactgcccgcggcgggcttggcagccttcttctcgccggccgcaaaggtcatgactgg
gtttatgtcggctcggtcgcaaccgggtttaatacgaagaacgcagcatacctgcgcgcc
actctcgacaggctcaagaccaaacggccggcggtgccgctcaagggcaagaacctgatc
ttcgcgcagccgaccttgatcgcggagatcgagtttcgcggctggacccatggcgggagc
ctgcgccacgcatcctacaagggccttcgcgaggttcaggacaatgccgcggtgtttgac
atgagcgagcgagtctga
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