Sinirhodobacter sp. HNIBRBA609: O5O51_02570
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Entry
O5O51_02570 CDS
T08716
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sinr
Sinirhodobacter sp. HNIBRBA609
Pathway
sinr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O51_02570 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinr03019
]
O5O51_02570 (rnr)
03016 Transfer RNA biogenesis [BR:
sinr03016
]
O5O51_02570 (rnr)
Enzymes [BR:
sinr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O5O51_02570 (rnr)
Messenger RNA biogenesis [BR:
sinr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O5O51_02570 (rnr)
Transfer RNA biogenesis [BR:
sinr03016
]
Prokaryotic type
tRNA degradation factors
O5O51_02570 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
ZSWIM1-3_C
MarR_2
MarR
Cwp6_N
Motif
Other DBs
NCBI-ProteinID:
WBL33612
LinkDB
All DBs
Position
513225..515489
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AA seq
754 aa
AA seq
DB search
MNQLPTKEQILAWLADHPGAGAKRDIAKAFGIKGAAKIELKRILREMTDEGLLERRRKSY
HDSAKLPPVSVLEILPADSSGDLWARAIEWEGEGPEPVILFIAKSGDPALAAGERILARI
AEVSGQGYDYEARLIRKVGEAQHRVVGIFRKGAEGGRIVPIDKGEQKEWVVGAGATQDAR
DGELVEAEQIGPRGRMGLPRARVIERLGDPTAPRAVSLIAIHQHGIPDDFPDAVIAEVDA
ARPADLEGREDLSELPFLTIDPADARDRDDACLAMPDDDPNNEGGHILWVAVADVAHYVR
PGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEHVPRAVLAVRMKIDSAGHKLS
HRFTRGMIRSVGSLEYAQVQAAREGRPDEKTAPLVDEVIAPLYECYNALVRARAARQPLD
LDLPERQIVIDEAGKVASVRFKERLDAHKLIEEFMVLANVAAAEELERLRRPLLYRVHEE
PSPEKIEALREVAQASGFNLAKGQVLKTAHLNRLLAQAEGSEFDELVNISTLRAMTQAYY
APQNLGHFGLALRSYAHFTSPIRRYSDLIVHRALILGHGWGKDGLSAQDIEILDETAQQI
SETERRSMAAERDTTDRYLAAYLSDRVGSEFTGRISGVQKFGAFVKLDETGADGLIPVRE
IGREFFHYDRDAQQLTGADSGTVIGIGQRVLVRLREAIPMTGGLELELLELEGASLPGPG
KGGKKPFRRGRKVAAIKAKERGIARKVKRTRKKP
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagttgcccaccaaagaacagatcctcgcatggcttgccgaccaccccggcgcc
ggtgcgaaacgtgacatcgccaaggccttcgggatcaagggcgctgccaagatcgaactc
aaacgcatcctgcgcgagatgaccgacgaggggctgctcgaacgccgccgcaagtcctac
cacgacagcgccaagctgccgcccgtttctgtgctcgaaatcctcccggccgacagttcc
ggcgatctctgggcgcgcgccatcgaatgggagggcgaaggccccgagccggtcatcctc
ttcatcgccaaatcgggtgacccggcactggcggcgggcgagcgtattctcgcccgcatc
gccgaggtctcggggcaaggttatgactatgaggcccgcctgatccgcaaggtcggcgag
gcccaacaccgcgtcgtcggcatcttccgcaagggcgccgagggcgggcgcatcgtgccc
atcgacaagggcgagcaaaaggaatgggtcgtgggggccggcgccacgcaggacgcccgc
gacggcgagttggtcgaggccgagcagatcggcccgcgcggccgcatgggcctgccgcgt
gcccgcgtgatcgagcgcctgggtgacccgaccgcgccgcgcgccgtttcactgatcgcg
atccaccagcatggcatccccgacgacttccccgatgccgtgatcgccgaggtcgatgcc
gcgcgccccgccgacctggagggacgcgaggatctgagcgagctgcccttcctcaccatc
gacccggccgatgcgcgtgaccgcgatgacgcctgtcttgcgatgcccgacgatgacccc
aataacgagggcggccatatcctctgggttgccgtcgcggatgttgcgcattacgtccgc
cccggctcggcgctggaccgcgaggcgcgcaagcgcggcaattcgacctatttccccgac
cgcgtcgtgcccatgctgcccgaccggctctcgggcgatctttgctcgctgcacgaacac
gttccgcgcgcggttctggccgtgcgcatgaagatcgacagcgcgggccacaagctcagc
catcgcttcacgcgcggcatgatccgttcggtcggctcgctcgaatacgcgcaggtgcag
gccgcacgcgaagggcgcccggacgaaaagaccgcgccccttgtcgatgaggtcatcgca
ccgctttatgaatgctacaacgcgctggtgcgcgcccgcgcggcacgccaaccgcttgat
cttgatctgcccgagcgccagatcgtcatcgacgaggctggcaaggtcgcctcggtgcgc
ttcaaggagcgtctcgacgcgcataagctgatcgaggaattcatggtgctggccaatgtt
gccgccgccgaggaactcgaacggctgcgccgcccgctgctttaccgcgtgcacgaagaa
ccctcccccgaaaagatcgaggcgctgcgcgaggttgcgcaggcatcgggcttcaacctt
gccaaggggcaggtgctgaagaccgcgcatctcaatcggcttctggcgcaggccgaaggc
tccgagttcgacgagttggtgaacatctcgacgttgcgggccatgacgcaggcctattat
gcgccgcagaaccttgggcatttcgggctggcgttgcggtcctacgcgcatttcacctcg
ccgatccggcgctattccgacctgatcgtgcatcgcgcgttgatccttggtcacggctgg
ggcaaggatgggctgagcgcgcaggatatcgagatcctcgatgagaccgcgcagcaaatc
tcggagaccgagcgccgctcaatggcggccgagcgcgacacgaccgaccgttatctggcg
gcctatctgtcggatcgcgtgggcagcgagttcaccgggcgtatctcgggcgtgcagaag
ttcggcgctttcgtgaaactcgacgaaaccggcgctgatggcctgatcccggtgcgtgag
atcgggcgcgagttcttccactatgaccgtgacgcgcagcaattgaccggtgccgacagc
ggcacggtgatcggcatcggccagcgggtgctggtgcgcctgcgcgaggcgatcccgatg
accggcgggctggagttggagctgttggaactggagggcgccagccttcccggccccggc
aagggtggcaagaagcccttccggcggggccgcaaggttgccgcgatcaaggcaaaggag
cgcggcatcgcccgcaaggtcaagcgcacgcgcaagaaaccctaa
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