Sinirhodobacter sp. HNIBRBA609: O5O51_11800
Help
Entry
O5O51_11800 CDS
T08716
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sinr
Sinirhodobacter sp. HNIBRBA609
Pathway
sinr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O51_11800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinr03019
]
O5O51_11800
Enzymes [BR:
sinr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O5O51_11800
Messenger RNA biogenesis [BR:
sinr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O5O51_11800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
DEDD_Tnp_IS110
AAA_19
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WBL32409
LinkDB
All DBs
Position
2395598..2396905
Genome browser
AA seq
435 aa
AA seq
DB search
MTLENFENLGLAPILLRNLQGLGLIKPTPIQSQAIPHVVKGRDILGLAQTGTGKTAAFGL
PMLTRIISYGKRPAPKTVRALVLAPTRELATQIHDNLAAYADGAPVRIQRVVGGASINVQ
TEKLSKGVDVLIATPGRLLDLLERRALVLSETKYLVLDEADQMLDIGFIHALRKIARLIP
ADRQTLLFSATMPKLMEELAASYLSDPVRVQVAAPGKAAEKIAQGIHFTTQGEKATLLAE
YLAKHRGELAVVFNRTKHGSDKLARLLENWGFPVLAIHGNKSQNQRERALAAFRAGEVDV
LVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAVAFCAPLEMGDLR
AIEKAMGDSIPVIGGMPHEDTGGVKPGARQRQGQRPGSKPGPRSQQQRPSKAKPIGGGQQ
APRRSAKPRKAQRHD
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgactttggaaaacttcgaaaacctcggcctcgcgccgatcctgctgcgcaaccttcag
ggcctcgggctgatcaagcctaccccgatccagtcgcaggccatcccgcatgtggtcaag
ggccgcgacatcctgggtctcgcccagacgggcaccggcaagacggcggcctttggcctg
cccatgctgacccgcatcatctcctatggcaaacgccccgcgccgaagaccgtgcgcgcc
cttgttctggcgccgacgcgcgagttggcgacccagatccacgacaaccttgccgcctat
gccgatggcgcgcccgtgcgtatccagcgtgtcgtgggcggcgcctcgatcaacgtccag
accgagaagctctcgaaaggcgttgacgtgctgatcgcaaccccgggccgcctgcttgac
ctgcttgagcgtcgcgcgctggtgctgtcggaaaccaaatatctggtgctcgacgaggcc
gaccagatgctcgacatcggcttcatccatgcgctgcgcaagatcgcgcgcttgatcccg
gcggaccgccagacgctgctgttctcggccaccatgcccaagctgatggaagaactggcc
gcaagctacctgagcgacccggtgcgtgtgcaggtcgccgcccccggcaaggccgccgag
aagatcgcgcagggcatccacttcaccacccagggcgagaaggccacgctgctggccgaa
tacctggccaagcaccgcggcgagttggccgtggtgttcaaccgcaccaagcatggctcg
gacaagctggcgcggctcttggaaaactggggcttcccggttctggcgatccacggcaac
aaaagccagaaccagcgcgaacgcgcgctggccgcgttccgcgcgggcgaagtcgacgtg
ctggtggcgaccgatgttgcggcgcgcggcctcgatattccgcaggtggcgcatgtctat
aactacgacctgccgaacgtgccggagaactacgttcaccgcatcggccgcaccgcgcgg
gcgggtcgtgacgggcgcgcggttgcgttctgcgcgccgctcgagatgggcgatctgcgc
gccatcgagaaggccatgggcgactccatcccggtgatcggcggtatgccgcatgaggac
accggcggcgtcaaacccggcgcgcgccagcgtcagggccagcgccccggctccaagccc
ggcccgcgcagccagcagcagcgcccctcaaaggccaagccgattggtggcggccagcag
gctccgcgccgctccgccaagcctcgcaaggcgcaacggcacgattaa
DBGET
integrated database retrieval system
