Sinirhodobacter sp. HNIBRBA609: O5O51_12865
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Entry
O5O51_12865 CDS
T08716
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sinr
Sinirhodobacter sp. HNIBRBA609
Brite
KEGG Orthology (KO) [BR:
sinr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinr03032
]
O5O51_12865 (topA)
03400 DNA repair and recombination proteins [BR:
sinr03400
]
O5O51_12865 (topA)
Enzymes [BR:
sinr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
O5O51_12865 (topA)
DNA replication proteins [BR:
sinr03032
]
Prokaryotic type
DNA Topoisomerases
O5O51_12865 (topA)
DNA repair and recombination proteins [BR:
sinr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
O5O51_12865 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WBL34684
LinkDB
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Position
2605517..2608114
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AA seq
865 aa
AA seq
DB search
MAVVVVESPAKAKTINKYLGSDYTVLASFGHVRDLPAKDGSVDPEHDFDMKWEVASDSKK
HIKAITDALKDDDELILATDPDREGEAISWHLEQALASKLTKKKVSRVTFNAITKAAITE
AMQHPRQVDTALVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVEREM
EIEAFKAREYWTVTAELSTPRGQTYTARLTVLGGKKLEKFDLATATDAEIAVHAVTSRDL
TVKSVEAKPASRNPYPPFMTSTLQQEASRKFGMGAKACMSAAQRLYEAGYITYMRTDGID
MAPEAVMAARDAIKTRFGEKYVPSSPRMYKNKAKNAQEAHECIRPTDMHLGPEKLKVADD
QWKLYDLIWKRTLASQMAAAVMERTTVDVGSKDGEVELRATGQVVTFDGFLKIYDQGRDD
DEGDDGARLPQIMQGEEANKGQITPDQHFTQPPPRYTEATLVKKMEELGIGRPSTYASIV
TTIQDRGYVRKDKNRLIPEDTGRLVTAFLTNYFRRYVEYDFTADLEDQLDDISAGDRPYK
EVLARFWRDFSAALGETAELRIGEVLEKIDEVLGPHLYPPRADGGDPRACPTCGAGRLHL
KTARSGGAFIGCGNYPECRYTRPLSAPSDEDGANLDGKILGEDGGEQITLRIGRFGPYVQ
KGEATTEAPKPPRASLPKGWSPESIDLERAQMLLSLPREIGIHPEDGALVEAGIGRYGPY
VKHNSTYANLPEVDEVFTIGMNRAIEVLAQKAARGPGRGAAAKPLKELGEHPDGGPVQVM
PGRYGPYVKWGKINATLPKDFEPEAITLEEALPLIEAKASKGGKKKAPAKAAKATKAAPK
KAAAKKPAAKKAAPKKAAAKKTAAD
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgttgttgttgtcgaatcccccgccaaggccaagacaatcaacaaatatctgggc
tctgactacacggttctggcctcgttcggccatgtgcgcgatctgcccgcgaaagacggc
tcggtggaccccgagcatgatttcgacatgaaatgggaggtcgcgagcgactcgaaaaag
cacatcaaggcgatcacagacgcgctcaaggacgatgacgaactgatccttgcaaccgac
cctgatcgcgagggggaggcaatctcgtggcaccttgagcaggccttggcgagcaagctg
acgaagaagaaggtcagccgcgtgaccttcaacgcgatcaccaaggccgcgatcaccgag
gcgatgcagcacccccgtcaggtcgataccgcgctggtcgaggcctatcttgcgcgccgg
gcgctggactatctggtgggcttcaacctctcgccggtgctctggcgcaagctgccgggg
gcgaaatcggcggggcgcgtgcagtcggtctgcctgcgcctgatcgtcgagcgcgagatg
gagatcgaggccttcaaggcccgcgaatactggacggtgacggccgaactgagcactccg
cgtggtcagacctacaccgcgcgtctgacggttctgggcggcaagaagcttgagaaattc
gaccttgccaccgcgaccgatgccgagatcgccgtgcatgcggtgacctcgcgcgatctg
acggtcaagtcggtcgaggccaagcccgccagccgcaacccctacccgcccttcatgacc
tcgaccctccagcaggaagccagccgcaagttcggcatgggcgcaaaggcctgcatgtcg
gcggcgcagcggctctatgaagcgggctacatcacctatatgcggaccgacggcatcgac
atggcgcccgaggctgtgatggccgcgcgcgacgcgatcaagacgcgctttggcgagaaa
tacgtcccctcctcgccgcggatgtacaagaacaaggctaagaacgcgcaggaagcgcac
gaatgtatccgcccgaccgacatgcacctcgggccggagaagctgaaggtcgctgacgat
cagtggaagctctacgatctgatctggaagcgcaccctcgccagccagatggctgccgca
gtgatggagcgcaccaccgtcgatgtcggctccaaggatggcgaggtcgagctgcgcgca
accggtcaggtcgtgaccttcgacggcttcctcaagatctatgaccagggccgcgacgat
gacgagggcgatgacggcgcgcgcctgccccagatcatgcagggcgaagaggccaataag
ggccagatcacgcccgatcagcacttcacccagcccccgccgcgctacaccgaggcgacg
ctggtcaagaagatggaagagctcggcatcgggcggccttcgacctatgcctcgatcgtc
accacgatccaggaccgcggctatgtgcgcaaggacaagaaccggttgatccccgaggat
accgggcggctggtgactgccttcctgacgaactacttccgccgctatgtcgaatacgat
ttcaccgccgatcttgaagatcagctcgacgacatctcggcgggcgaccggccgtataaa
gaggtgctggcgcggttctggcgcgatttctcggccgcgcttggcgagaccgccgaattg
cgcatcggtgaggtgctggaaaagatcgacgaggttctcgggccgcacctctatccgccg
cgcgccgatggcggcgacccgcgcgcctgccccacttgcggggccgggcgtctgcacctc
aagaccgcgcgttcaggcggggccttcatcggttgcggcaattaccccgaatgtcgctat
acccgcccgctctcggcgccctcggacgaggacggcgcaaaccttgacggcaagatcctg
ggcgaggatggcggcgagcagatcaccctgcgcatcggccgcttcggcccctatgtgcaa
aagggcgaggccaccacagaggccccgaaaccgccgcgtgccagcttgcccaaaggctgg
tcgcccgagtcgatcgaccttgagcgcgcgcagatgctgctcagcctgccgcgcgaaatc
ggtatccaccccgaggatggcgcgctggtcgaggccgggatcggccgttacggcccctat
gtgaagcacaactccacctacgcaaacctacccgaggtcgatgaggtcttcaccatcggc
atgaaccgcgcaatcgaggttctggcgcagaaagccgcgcgtggccccgggcgcggcgcc
gccgccaagccgctcaaggaactgggcgagcacccggatggcgggccggttcaggtcatg
cccggccgctacgggccctatgtcaaatggggcaagatcaacgccaccctgcccaaggac
ttcgagcccgaggcgatcacgctcgaagaggccctgcccctgatcgaggccaaggcatcg
aagggcggcaagaagaaagcccccgccaaggcagccaaggccacgaaagcagcccccaag
aaagccgctgcgaaaaagccggccgccaagaaagcggctccgaaaaaagccgccgcgaag
aagaccgccgcggactga
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