Sellimonas intestinalis: K5I26_04675
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Entry
K5I26_04675 CDS
T08070
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sint
Sellimonas intestinalis
Pathway
sint03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sint00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5I26_04675 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sint03021
]
K5I26_04675 (rpoC)
03400 DNA repair and recombination proteins [BR:
sint03400
]
K5I26_04675 (rpoC)
Enzymes [BR:
sint01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5I26_04675 (rpoC)
Transcription machinery [BR:
sint03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5I26_04675 (rpoC)
DNA repair and recombination proteins [BR:
sint03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5I26_04675 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UOX63371
LinkDB
All DBs
Position
984598..988386
Genome browser
AA seq
1262 aa
AA seq
DB search
MTGNNNEATYQPMTFDAIKIGLASPEKILEWSRGEVTKPETINYRTLKPERDGLFCERIF
GPSKDWECHCGKYKKIRYKGVICDRCGVEVTKSAVRRERMGHIALAAPVSHIWYFKGIPS
RMGLILDLSPRTLEKVLYFASYIVLDKGETDLQYKQVLSEQEYQDAREKWGSAFRVGMGA
EAIQELLRSIDLEKEYHELREGLEGATGQKRARIVKRLEVVEAFRESGNKPEWMIMTVIP
VIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVANGTAHNIKNAKKMVERLQTEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAKGEGKSFKSVNEAILAYENQAIT
LHSRIKVRVSKTLPNGTVKYGIVESTLGRFLFNEIIPQDLGFVDREAEGNELLLEVDFHV
GKKQLKKILEKVINTHGASATAEVLDNVKAIGYKFSTRAAMTVSISDMTVPPQKPEMIQQ
AQDTVDKITRNFKRGLITEEERYKEVVETWKATDDALTEALLSGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTTGRTIELPIKSNFREGLDVLEYFMSAHGARKGLSDTALRTA
DSGYLTRRLVDVSQELSIREVDCVAKGEEIPGMYVKAFTDGNEEIESLQERITGRYSCET
ICDSEGNVIVKANHMITPKRAAAIVTKGVDENGGEIKKVKIRTILTCKSHLGVCAKCYGA
NMATGEPVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKP
KGLAIITEFAGTATINDTKKKREIIVTNNETGESKAYLIPYGSRIKIQDGVQLEAGDELT
EGSVNPHDILRIKGLRAVQDYMIQEVQRVYRLQGVDINDKHIEVIVRQMLKKVRIEENGD
SEFLPGTMVDTLEFEDRNKELVADGKEPATGEQIMLGITKAALATNSFLSAASFQETTKV
LTEAAIKGKVDPLIGLKENVIIGKLIPVGTGMSKYRDIRLNTDAMIAAKKEEEERLRHEA
EEEAESEQEAAVESEGENADEIEAADTEMELTEEISEETEEDLDDMSGESDDEDMENVES
AE
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgacgggaaacaataatgaagcgacgtatcagccgatgacctttgacgcgatcaagatc
gggctggcatcacctgaaaagattctggagtggtcaaggggagaggtcacaaaacctgag
acgatcaactacagaaccttaaagccggagcgtgacggactgttctgcgagcggattttc
gggcctagcaaggactgggaatgtcactgtggtaaatataagaagatccgttataaaggt
gtgatctgtgaccgctgcggtgttgaagtgacgaaatccgcagtacgccgtgagcgtatg
ggacatattgcgctggctgccccggtatcccatatctggtattttaaaggtatcccaagc
cgtatgggactgatcctggatctttctccgagaactctggagaaagtactgtactttgct
tcctatattgtactggacaaaggggagacggacctgcagtataagcaggtgctttccgag
caggagtatcaggatgcgagagaaaaatggggaagtgctttccgtgtcggtatgggtgcg
gaagcaattcaggagcttttaagaagtattgacctggagaaagaatatcatgaattaaga
gaaggtctggagggcgctaccggacagaagcgcgcgagaattgtgaagcgtctggaagtg
gtagaagcgttccgggagtccggaaacaagccggagtggatgattatgacagttatcccg
gtcattccgccggatctgcgtccgatggttcagcttgacggtggacgttttgcgacatcc
gacttaaacgacctatacagaagaatcatcaatcggaacaaccgtctgagaagacttctg
gagcttggtgccccggatatcattgtaagaaacgaaaagagaatgcttcaggaggcggta
gacgccctgatcgacaacggccgccgtggccgtccggtcacaggacctggaaaccgcgct
ctcaaatctctttccgatatgttaaagggaaagtccggacgattccgtcagaatctgctc
ggaaaacgtgtcgattactccgggcgatccgttatcgtcgtagggccggagttgaagatc
tatcagtgcggtcttccgaaagagatggcaatcgagctgttcaaaccgtttgtaatgaaa
gagcttgttgcgaatggtacagcgcacaatattaaaaacgcgaagaagatggtggagaga
cttcagacagaagtttgggacgttctggaagacgtgatcaaggaacatccggtaatgtta
aaccgtgcccctactctgcatcgtctgggaattcaggcttttgagccgattctcgtagaa
ggaaaagcgattaagcttcatcccctcgtatgtaccgctttcaacgcggatttcgatggt
gaccagatggcagttcatcttccgctttctgtagaagctcaggcggagtgccgcttcctt
ctcctttcaccgaacaacctgctgaaaccgtcagacggtggtccggtagccgttccttcc
caggatatggtacttggtatctattacctgacacaggaaagaccaggagccaaaggagag
ggcaaatcattcaagagcgtaaacgaagcgattcttgcttacgaaaaccaggcgatcacc
ttacattccagaatcaaggtacgtgtctccaagacactaccgaatggaacggtgaaatat
ggaatcgtagagtctacactgggacggttcctcttcaacgagattattccgcaggatctt
ggttttgtagaccgtgaagcagagggtaatgagctgcttttggaagtcgatttccatgtc
gggaagaagcagttaaagaagatcctggagaaggtaatcaatacccacggcgcttctgcg
acagcagaagtacttgacaatgtaaaagccattggatacaagttctccacacgggcagcg
atgacggtatctatttctgatatgacggtacctccgcagaagcctgagatgatccagcag
gcacaggatacggtggataagattacacggaactttaagcgtggtctgattaccgaagaa
gagcgttacaaagaagtcgtagagacatggaaagcaacagacgatgccttgacagaggcc
ctgctttccggtctggataaatacaacaatatctttatgatggcggattccggagcccgt
ggttctgacaagcagatcaaacagcttgccggtatgcgtggtctgatggcagatacgaca
ggacggactatcgagttgccgatcaagtccaacttccgtgaaggtctggacgtactggaa
tacttcatgtcggcccatggagcacgtaaaggtctttctgatacggctcttcgtacagcc
gactccggatacctgacaagacgtcttgttgacgtttcccaggagctttctatccgtgaa
gtagactgtgttgccaaaggagaagaaattcctggtatgtatgtcaaagcatttacggat
ggaaacgaagagattgagagccttcaggagcgtatcacaggacgctactcctgtgagacg
atctgcgacagtgaaggaaatgtcattgtaaaggcaaaccacatgattacaccgaagcgt
gcggcggcgatcgtcacaaaaggtgtggatgaaaacggcggcgaaatcaagaaggtgaag
atccgtacgatcctgacctgtaaatctcatcttggcgtctgtgcgaagtgttacggagca
aacatggcaacaggtgaaccagtccaggttggagaggcggtcggaatcatcgccgcacag
tctatcggtgagcctggtacacagcttacgatgcgtactttccatacgggtggagttgcc
ggtgacgatatcacgcagggtcttcctcgtgtcgaggagcttttcgaggcaagaaagccg
aagggacttgcaattatcacagagtttgcgggaaccgcaacgatcaacgatacaaagaag
aagcgtgagattattgtcaccaacaatgagacaggagaatccaaggcatacctgattccg
tacggttccagaatcaagattcaggacggtgtgcagctggaggccggagacgagctgacg
gaaggtagtgttaatccgcacgatatcctgagaatcaaaggactgcgtgcagtacaggat
tatatgatccaggaagtacagagagtataccgtctccagggtgtagatatcaacgataag
catatcgaagttattgtgcgtcagatgctgaagaaagtccgcatcgaggagaatggagat
tctgaattccttccgggaaccatggtagataccctcgaatttgaggatagaaataaagag
cttgtggctgacggaaaagagccggcgacaggtgagcagatcatgcttggtatcaccaag
gctgcgcttgcgacgaattccttcctctccgccgcatccttccaggagacgacgaaagtc
ctcactgaggcggcaatcaaaggaaaagtcgatccgctgattggcctgaaagaaaacgtt
atcatcggaaagctgattccggttggtacgggcatgagcaagtaccgtgacatccggctg
aataccgacgctatgattgcggccaagaaagaagaggaggaacgtcttcgccatgaagcg
gaagaagaggcggaatccgaacaggaggcagcagtagagtctgagggcgagaatgcagat
gagatagaagcagcagatacagagatggaactgacagaagaaatctctgaggaaacagag
gaagatctggatgacatgtccggcgagtcggacgacgaagatatggaaaacgtcgaatcg
gcggaataa
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integrated database retrieval system
