Sellimonas intestinalis: K5I26_09290
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Entry
K5I26_09290 CDS
T08070
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sint
Sellimonas intestinalis
Pathway
sint03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sint00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K5I26_09290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sint03400
]
K5I26_09290 (mfd)
Enzymes [BR:
sint01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5I26_09290 (mfd)
DNA repair and recombination proteins [BR:
sint03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K5I26_09290 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
Zeta_toxin
RecG_dom3_C
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
UOX61417
LinkDB
All DBs
Position
1946287..1949661
Genome browser
AA seq
1124 aa
AA seq
DB search
MKAFTAPLLELAEFDTIQKTKYREPGMIQIAGSTGSQKGHLAYALAREDRRVLYVVQDEE
KAKEILEEYQFLDAGVFFYPAKDFLFYRADIRGKYLTQKRMEVIRALREEEKVTVVTTID
ALMDGVRPPSGINGQIFTLRVGDMSDLEELKVRLSKMGYDREIQIEGPGQFAVRGGILDV
YPLTEEMPVRIEFWDDEIDSIRTFDVETQRSVENREEITFYPASDTVSGKQGVSFLQYFQ
PEETLLFLDEPARLYERGLTIEEEVKEAQERREEAERTSKTEEDEIRMFPVREIVGLLNS
YHSIGFTALEGKLKEFHVRETYSILAKNVNPYNSSFEVLTRDLKRLKRNGYRVILLSGSR
TRARRLAEDLRDYDLNSFYDEDPNRLVKPGEIFVSYGHVAVGYEYPMLKFTVISETDIFG
KKKRKKRRKIYEGEKIQSFTDLKPGDYVVHENHGLGIYQGIEKIEVDRIEKDYMKISYAG
GGNLYIPATQMDLIQKYASADAKKPKLNRLGGQDWERTKTRVRKAVQEIARDLVELYATR
QEKDGYAYEPDTVWQKEFEEMFPFEETDDQLAAIEDTKKDMESHKIMDRLICGDVGFGKT
EVAIRAAFKAVQENKQVAFLVPTTILAQQHYNTLVQRMKDFPVRVDLMCRFRTPAQQKKT
LEDLMKGQVDILVGTHRILSQDVTFKDLGLLVIDEEQRFGVQHKEKIKKLRENVDVLTLT
ATPIPRTLHMSLIGIRDMSVLEEAPMDRMPIQTYVMEYQDEMVREAIVRELSRQGQVYYV
YNKVKDIAEITARIQSLIPEANVAYAHGQMREHQLERIMYDFINGDIDVLVSTTIIETGL
DISNVNTMIIHDADKLGLSQLYQLRGRVGRSNRMAYAFLLYRRDRLLREVAEKRLAAIRE
FTDLGSGFKIAMRDLEIRGAGNLLGEAQHGHMEAVGYDLYCKMLNEAVKGMKQGIDQDEV
ESFTTTIDLNVDAFIPASYIPDEYQKLDIYKRIALISTEDEMDDMMEELIDRFGDIPKKV
QKLILIARIKALAHSVYVTAIEQKGSTLKITMYEKAKVQVQEIPKLLERRKGELLFKNDA
PPYFLYEQKKRNRKEKDPDILEVVKNLLNDIKTLIVKGKPDIIG
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttttacggcgcctcttttggagcttgcggagtttgatactattcagaagaca
aaataccgggaaccggggatgattcagattgccggaagtaccggatcacagaaaggacac
ctcgcctatgcccttgccagggaggacagacgggtgctttatgttgtgcaggatgaggaa
aaggcaaaggagatcttggaggaataccagtttctggatgccggggtctttttctacccg
gcaaaggattttctgttttaccgtgcggatatccggggaaaatatctgactcagaagagg
atggaagtgattcgggcgcttcgggaggaggagaaggtcacggtggtgacgacaatcgat
gctttgatggacggcgtccgtcctccgtccggcatcaatggacagatctttaccctgcgc
gtgggagacatgtcggacctggaggaattaaaggtcagactttccaagatgggatacgac
agagaaatccagattgaaggaccagggcagtttgctgtacgaggtgggattttggacgtg
taccccctgacagaagagatgccggtgcggattgaattctgggatgacgagatcgactcc
atccggacgtttgacgtggagacgcagcggtctgtggaaaaccgggaggagatcactttc
tacccggcatcggatacagtctccggaaaacaaggagtttcttttttgcagtattttcag
ccggaggagacacttctgtttttggatgagcctgcaaggttatatgagagagggctgaca
atcgaggaggaggtcaaagaggcgcaggaaagaagagaggaagcggagcggacctcaaag
acagaggaggatgagatccggatgtttccggtgcgtgagattgtggggcttttaaatagc
tatcatagtattgggtttaccgcgctggaaggaaaactgaaggaattccatgtgcgggag
acttacagtatcctggcaaagaatgtcaacccatataacagcagttttgaagtcctgaca
agggatttgaagcggctgaagcgaaatggataccgggtgatccttctgagtggctcccgg
acaagagccaggagattggcagaagatctgcgggattatgatttaaacagcttttatgat
gaagatccaaaccgcctggtaaagccgggggagatttttgtctcctacggccacgtggca
gtgggttatgaatatccgatgctgaaattcaccgttatctctgagacggatatcttcgga
aaaaagaagagaaagaagcgcagaaagatctatgagggggagaagatccagagttttacg
gatttaaagccgggggactatgtggtacacgaaaatcatggccttggtatctatcaggga
atcgagaagattgaagtggaccggattgagaaggattatatgaaaatctcctacgccggg
ggcggcaatctttatattccggccacccagatggatctgatccaaaagtacgcttccgcg
gatgcaaagaagcccaagttgaaccggctgggaggccaggactgggagaggacgaagacg
cgggtacgaaaagccgtacaggagattgcaagagatctcgtagagctttatgcgacgcgt
caggaaaaggacggctatgcctacgagccggatactgtatggcaaaaagagtttgaagag
atgtttccctttgaggagacggatgaccagttggcggccatcgaggacacgaaaaaggat
atggaaagccataagattatggatcgtctgatctgcggagatgtgggatttggaaagact
gaggtggcgatccgagccgcttttaaggctgtacaggagaataagcaggttgcatttctc
gtgccgaccaccattctggcacagcagcattacaacacacttgtgcagagaatgaaggat
tttccggtcagggtagatctgatgtgccgtttccggacgcctgctcagcagaagaagaca
ctggaagatctgatgaaagggcaggtggatattcttgtggggacccaccggattttaagt
caggatgtgacgtttaaagatctgggacttctggtgattgacgaggagcagcgttttggt
gttcaacacaaggagaagataaaaaagctccgggaaaatgtggacgttctgacactgacg
gctaccccgattccacgaaccctccacatgagcctcatcggaattcgggatatgagcgtg
ctggaggaagcaccgatggacaggatgccgatccagacgtatgtcatggaatatcaggat
gagatggtacgggaggccatcgtgcgggaactctccagacaggggcaggtctattatgtt
tataataaggtaaaagacattgcggagatcacagcccgtatccagagcctgattccggag
gcaaatgtggcttacgctcacgggcagatgcgggagcatcagttggaaaggatcatgtat
gatttcatcaatggggatatcgacgtgctcgtctctacaaccattattgagaccgggctt
gatatttctaatgtcaatacgatgattatccacgacgcggacaaactggggctttctcag
ttataccagcttcggggccgtgtaggacggtccaacaggatggcctatgcttttctcctt
tatcggagagaccggcttttacgggaggtggcggagaaacgtctggcggcgattcgggag
tttaccgatctgggatcgggatttaagattgccatgagggatctggaaatacggggagca
ggaaatcttctcggagaagcacagcatggccacatggaggcagtagggtatgatctctac
tgtaaaatgttaaacgaggcagttaaaggcatgaaacaaggtatagatcaggatgaggtg
gagagctttaccacgacgatcgacctgaatgtggatgcatttattccggcctcctatatt
ccggacgagtaccaaaaactcgatatttacaagcggattgccctcatcagtacagaagac
gagatggacgatatgatggaagagctcatcgaccgcttcggggatattcctaagaaagta
cagaaactcatcttgattgcacggatcaaggctcttgcccactccgtgtatgtgacggcc
atcgagcaaaaaggcagcacactcaaaatcacgatgtatgaaaaggcaaaagtgcaggtt
caggagattcccaaacttctggagcgaagaaaaggagaattgctattcaaaaatgacgca
cctccatatttcctttacgagcagaaaaagcgaaatcgcaaagagaaagatccggatatc
ctggaagtcgtgaaaaatctgttaaatgacataaaaacattgattgtaaaagggaaaccg
gatataatagggtag
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