Sulfurovum indicum: IMZ28_05900
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Entry
IMZ28_05900 CDS
T07193
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sinu
Sulfurovum indicum
Pathway
sinu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IMZ28_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinu03019
]
IMZ28_05900
03009 Ribosome biogenesis [BR:
sinu03009
]
IMZ28_05900
Enzymes [BR:
sinu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IMZ28_05900
Messenger RNA biogenesis [BR:
sinu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IMZ28_05900
Ribosome biogenesis [BR:
sinu03009
]
Prokaryotic type
rRNA helicases
IMZ28_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
GlgB_N
AAA_30
SBF_like
Motif
Other DBs
NCBI-ProteinID:
QOR61000
UniProt:
A0A7M1S3S3
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All DBs
Position
1170787..1172244
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AA seq
485 aa
AA seq
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MKFTDFNLKETIQAAVTEAGFKEPSPVQKEAIPLVLEGHDMIAQAQTGTGKTAAFGLPIM
SMMKADGSVEGLVIVPTRELAMQVSDELYRFGKLSGLKTATVYGGTAYGKQIERIRQASI
IVATPGRLQDLLMSGKIKLNPKFVVLDEADEMLDMGFLDEIKNIFTFLPKERQTLMFSAT
MPKAIRKLAEEILENPKTVSITKSESTNSKITQYYYVVQERERDDALVRLIDYKNPDKCI
IFCRMKKEVDRLVAHLTAQGFKVSGLHGDMEQKQREVTIRAFKQGGVDIFVATDVAARGL
DVNDVTHVFNYHIPFDSESYVHRIGRTGRGGKSGEAITLVSPNELRTIKRIEKDVGAKLV
TQVIPTRIEVQNNRQDELIAKIAETQITDKAIELVKTLQHDLDIVTIAHLLASMIQNENT
VKGKDIIGLGLEEIELLIERAMQNRGNDRGRNRSGYRGNRRRSGGGDRNRHGKNGRNSRN
GGHRS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacagattttaacctcaaagagaccattcaggcagccgtaacagaagctggc
tttaaagaaccaagtccggtacagaaagaggccattcctctcgtacttgaaggacacgat
atgatcgcacaggcacaaacaggaacaggaaagaccgcagcattcggtctgccgatcatg
agtatgatgaaagccgatggcagcgttgaagggcttgtcatcgttcctacacgtgaactt
gctatgcaggtcagtgatgaactttaccgtttcgggaaactttccgggctgaaaaccgct
actgtttacggtggtaccgcctatggcaaacagatcgagcgtatcagacaggcttccatc
atcgtagcgactcccggacgtcttcaggatcttcttatgagcgggaaaataaaactcaat
ccaaaattcgtagtactcgatgaagctgatgaaatgcttgatatgggattccttgacgag
atcaagaatatcttcaccttcctgccaaaagagcgtcagacattgatgttctctgcaacc
atgcccaaagccatcagaaaactggccgaagagatccttgaaaatcccaagaccgtctct
atcacaaaaagcgaaagtaccaactccaagatcacccagtactactatgtagttcaggag
agagaaagagacgatgccctggtcagacttattgactacaagaaccctgacaagtgtatt
atcttctgccgtatgaaaaaagaggtcgacagacttgtcgcacaccttaccgcccaggga
ttcaaggtaagcggtctgcacggagatatggaacagaaacagagagaagtaaccatcaga
gcattcaaacagggaggtgtagacatctttgtggcaactgatgttgctgcacgtggtctc
gatgtcaatgatgtaacccatgtcttcaactaccatattccatttgattccgaaagttat
gtacaccgtatcggacgtacaggacgcggcggtaagagcggtgaagcgatcacactggta
agtcctaacgaactgcgtaccatcaaacgtatcgaaaaagatgtcggagcaaagctggtc
acacaagtcattcctacccgtatcgaggtacagaacaaccgtcaggatgagctcatagcg
aagatcgcagagacacagatcaccgataaagccattgaactggtaaaaaccctgcagcat
gatcttgacattgttaccatcgcccacctgctcgcatcaatgatacagaatgaaaataca
gtcaaaggcaaagacattatcggtcttggactcgaagagatcgaactgctcattgaaaga
gcaatgcagaaccggggcaatgacagaggccgtaaccgcagtggttaccgtggaaacaga
agaagatccggaggtggtgaccgaaacagacacggaaaaaacggacgcaacagcagaaat
gggggccatcgctcttaa
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