Sulfurovum indicum: IMZ28_10150
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Entry
IMZ28_10150 CDS
T07193
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sinu
Sulfurovum indicum
Pathway
sinu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sinu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IMZ28_10150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinu03021
]
IMZ28_10150 (rpoC)
03400 DNA repair and recombination proteins [BR:
sinu03400
]
IMZ28_10150 (rpoC)
Enzymes [BR:
sinu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IMZ28_10150 (rpoC)
Transcription machinery [BR:
sinu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IMZ28_10150 (rpoC)
DNA repair and recombination proteins [BR:
sinu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IMZ28_10150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QOR61774
UniProt:
A0A7M1S3L4
LinkDB
All DBs
Position
complement(2049724..2054253)
Genome browser
AA seq
1509 aa
AA seq
DB search
MSNVLENLVPIDLNSDEKPQDIAALQLKVASPEKILSWSYGEVKKPETINYRTLKPERDG
LFCAKIFGPIRDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRNRMGHIDLIAPVAHIW
YVSSLPSRIGTLLGVKMKDLERVLYYEAYIVKNPGEASYDNEGLNPLQKYDVLNEEQYQQ
ISSRFGDTGLDARMGGEIVQELLAELDLVEMFSQLKEEIAATKSEAKRKTIVKRLKVIEA
FLHSGNRPEWMMLTQLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLVELD
APEIIVRNEKRMLQEAVDALFDNGRRGNAVKGANKRPLKSLSEVIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPDLRMDQCGLPKKMAIELFKPHLMAKLEEKGYATTLKQAKKMIEKQEN
EVWECLEEVVDNYPVLLNRAPTLHKLSIQAFHPRLIEGKAIQLHPLVCSAFNADFDGDQM
AVHVPLSDEAIAEAKVLMLASMNILLPASGKAIAVPSQDMILGLYYLTLEKNDVKGEHKL
FANVEEVEIAFEQQALDLNARIRTIIDGRITTSTAGRLILKSIIPDYVPEKYWNKVLKKK
DIGALVDYIYKEGGVAESAGFLDDLKDMGFKYATKVGVSISVDDIKIPEVKNEIVRKAKE
EVKEIQRQFGAGLLTDQERYNKIIDIWTDANNSIAEALMELIKKDKDGFNSVHMMADSGA
RGSAAQIRQLSGMRGLMAKSDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVAQNVKISMADCGTHEGVEVSDIVVGNEMIEPLADRIYGRVLAEDIID
PITNEVLVSEGTMIDEETAKRVEEAGVRSVVMRAPSSCKAPKGICAKCYGLNMADNKMVK
PGEAVGVIAAQSIGEPGTQLTLRTFHTGGTATAGKEERQVVATQEGFVRYYNLSVYRNTE
GKLIVANRRNAGVLLVEPKIKAVIKGKVSVIVTHDEYIVSVQADGQDEVKYNLRKSDVAK
SNELAGVAGKVEGKLFLPLKDGDMVEEGDSIVEVIKEGWSVPSRIPFASELKVEDGAPVT
QNVLAESRGTVKFFLLKGDYLEAHKGVKAGDKVDEKGLFAVIVDENNREAARHYISRGSV
LQIDNDAKVERGTTLSAPEVSTQVVIAEWDPYSEPIIAEQKGTLKFEDIIPGVTVVEQFD
EVTGDTRLELNEHIPAAYKPAIVLATDSGELIRYQLDPKTILFVNDGDEVNIADILAKTP
KAAIKSKDITGGLPRVSELFEARRPKDIALIAQIDGVVSFGKPLRGKERLIITGDNGQVT
EQFVDKGKVVLVHAGEYVHAGEKLTDGVVSSHDILAALGEKALYEYIVSEVQMVYRRQGV
NISDKHIEIVTSQMMRQVKVVDSGNSNFIAGDIVSRRKFQEENERVIKLGGEPAIAEPML
VGITRAAVGADSIISAASFQDTTKVLTSASIAGTIDTLEDLKENVVIGRLIPVGTGMINN
DDIKLQPAE
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatgtattagagaatttggtaccgatcgacctgaacagcgatgaaaaaccacag
gatattgcagcccttcaactaaaagtggcaagcccagagaagatcctctcatggagttac
ggtgaagtaaaaaaacctgagacgatcaattacagaaccttgaaacctgagcgtgacgga
cttttctgtgcgaagatcttcggaccgataagagactatgagtgtctgtgcggaaaatac
aagaagatgcgctataaaggggtagtctgtgagaagtgtggtgttgaagtcacttcatct
aaagtaagaagaaacagaatgggtcatatcgatcttatcgcaccggtagcacatatttgg
tatgtctcttcactcccatcacgtattggtactcttctaggcgtcaaaatgaaagacctt
gagcgtgtactctactatgaagcatatattgttaagaaccctggtgaggcaagttacgac
aacgagggccttaacccgctccaaaagtatgatgtgctcaatgaagagcagtatcagcag
atctcttcacgtttcggagatacggggctggatgcacgtatgggtggtgagatcgtacag
gaactgctcgcagagcttgatcttgtagagatgttctctcagcttaaagaagagattgca
gcaacgaaatctgaggcaaagagaaagacgatcgttaaaagactgaaagtgatcgaagca
ttccttcattcaggtaaccgtcctgagtggatgatgctgacacagcttccggtacttccg
ccagatttgagaccattggtaagccttgatggtggaaaatttgctgtttctgatgtaaat
gatctctatagaagagttattaaccgtaaccagcgtctgaagagactggtagagcttgat
gcaccggagatcatcgttagaaatgaaaagcgtatgcttcaggaagcagttgatgcactc
tttgacaatggtagacgcggaaatgccgtaaaaggcgcaaacaaaagaccactgaaatca
ctctctgaagtgatcaaagggaagcaggggcgtttccgtcagaacctgcttggtaagcgt
gttgacttctccggacgttctgttatcgttgtcggtccggatttgagaatggaccagtgt
ggtctgcctaagaagatggctattgaactctttaagccgcatttgatggcgaaactcgaa
gagaagggttatgcgacgacactgaagcaagccaagaagatgattgaaaagcaggaaaac
gaggtatgggagtgtctggaagaggttgttgataactatccggttcttctcaaccgtgca
ccgacacttcacaagctttcgattcaggcattccatccaagacttatcgaaggtaaagcg
atccagcttcatccacttgtctgttcggcgttcaatgccgacttcgatggtgaccagatg
gctgtacacgtaccgctttcagatgaagcgattgccgaagcaaaagttttgatgcttgca
tctatgaatatcttgctcccggcatcaggtaaagcaattgcggtaccttcacaggatatg
attttgggtctttactatctgacactggagaagaatgatgttaaaggcgaacataagcta
tttgctaatgttgaagaggttgagatcgcattcgaacagcaggcgctggatctgaatgca
cgtatcagaacgatcattgacggacgtattacgacttcgacagccggtcgtctgatcctg
aagtcgatcattccggattatgtaccggaaaagtactggaacaaagttcttaagaaaaaa
gatattggtgcgttggttgactatatctataaagagggtggtgtagctgagagtgcagga
ttccttgatgatcttaaggatatgggtttcaaatatgcaactaaagtcggtgtttccatc
tctgtggatgatattaagatccctgaagtcaaaaatgagattgtacgtaaagccaaagaa
gaagtgaaagagatccagagacagttcggtgcgggtctattgaccgatcaggaacgctat
aacaagatcattgatatctggaccgatgcgaacaactctattgctgaagcgttgatggaa
ctgatcaaaaaagacaaagatggattcaactctgttcacatgatggcggattccggtgcg
aggggttctgctgcacagatcagacagctttcaggtatgaggggtcttatggcaaagtct
gacggatcgattattgaaactccgattacatcaaacttccgtgaaggactaaatgtactt
gaatactttatttcaacccacggtgcgagaaaaggtcttgccgataccgcgcttaaaaca
gcaaatgccggttacctgacaagaaagcttatcgacgtggcacaaaatgtgaagatttct
atggcggactgtgggacacatgaaggtgtagaagtctctgatattgttgtaggtaatgaa
atgatcgaaccgcttgcagacagaatctacggaagagtacttgcggaagatattattgac
cctattaccaatgaagtattggtcagtgaaggtacaatgatcgatgaagagacggcaaaa
cgtgtagaggaagcgggtgtacgttcagtagttatgagagcaccgtcttcctgtaaagca
cctaaaggcatctgtgcaaaatgttacggtctgaacatggcagacaataaaatggtcaaa
ccgggtgaagctgtaggtgttattgcagcacagtcgatcggtgagccgggaacacagttg
acacttcgtactttccacacaggtggtactgcgactgcaggtaaagaggagcgtcaggtt
gttgcgacacaggaaggttttgtacgttactacaatctctctgtctatagaaacactgaa
ggtaagttgatcgtagcaaacagaagaaatgccggtgtacttttggttgaaccgaagatc
aaggcggtgatcaaaggtaaagtctctgttattgtgacacatgatgagtatatcgtttct
gttcaggcggatggccaggatgaagttaagtacaacttgagaaaatctgatgttgccaag
tccaatgagcttgccggtgttgccgggaaggttgaaggaaaactcttcctgcctcttaag
gacggagatatggtagaggagggtgactctattgttgaagtgatcaaagagggatggtca
gtacctagccgtattccgtttgcatctgaactgaaagtggaagatggtgcaccggttaca
cagaatgttcttgcagagtcaagaggcacggtaaagttcttcctacttaaaggtgactac
cttgaggcacacaaaggggttaaagccggagataaagtggatgagaaaggtctctttgct
gtgatcgttgatgagaacaacagagaagcggcaagacactatatctcaaggggttccgtg
cttcagatcgacaatgatgcgaaagtggaaagaggaacaacactctctgctccggaagtt
tcaacacaggtagtgattgctgagtgggatccttattctgaaccgatcattgctgagcag
aagggaacattgaagtttgaagatattatcccgggtgttacagtagttgaacagttcgat
gaagtaaccggtgatacaaggcttgagctgaatgagcatattcctgcagcatacaaaccg
gcgatcgtactggcaacagactcaggagagttgatcaggtatcagttggacccgaaaacg
atacttttcgtaaatgacggtgatgaagtgaatattgctgatatcttggcaaaaacgcca
aaagctgcgattaagtcaaaagatattaccgggggtcttccaagagtttccgagcttttt
gaagcacgtcgtccaaaagatattgctctaatcgcacagatcgacggtgtggtaagcttt
ggtaaaccgctgcgcggcaaggagagactgatcatcacaggtgacaacggccaggtaaca
gagcagtttgttgacaaaggaaaggttgtattggtacacgctggtgaatatgttcatgcc
ggggagaaacttaccgatggtgttgtttcaagccatgatattcttgcagcactcggagaa
aaagcactttacgagtatattgtttctgaagtacagatggtctatcgtcgtcagggggtt
aatatctctgacaagcatattgagatcgtgacttcccagatgatgagacaggtgaaagta
gttgacagcggtaatagtaactttattgccggagacattgtgtcacgccgtaagttccag
gaagagaatgagcgtgtaatcaagcttggcggagagccggcgatcgctgagcctatgctt
gtcggtatcacccgtgcagcagtcggtgcagactccatcatctctgcagcatccttccag
gatacaacaaaagtacttacctctgcatctattgcaggtacgatagatacgcttgaagat
cttaaagagaatgttgtcatcggacgtctcattcctgttggtacaggtatgatcaacaat
gacgatatcaagcttcaaccggctgagtga
DBGET
integrated database retrieval system
